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RINL (Ras and Rab interactor like)

Identity

Alias_symbol (synonym)FLJ45909
Other alias-
HGNC (Hugo) RINL
LocusID (NCBI) 126432
Atlas_Id 72652
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 38867832 and ends at 38878279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAP7D1 (1p34.3) / RINL (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RINL   24795
Cards
Entrez_Gene (NCBI)RINL  126432  Ras and Rab interactor like
Aliases
GeneCards (Weizmann)RINL
Ensembl hg19 (Hinxton)ENSG00000187994 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187994 [Gene_View]  chr19:38867832-38878279 [Contig_View]  RINL [Vega]
ICGC DataPortalENSG00000187994
TCGA cBioPortalRINL
AceView (NCBI)RINL
Genatlas (Paris)RINL
WikiGenes126432
SOURCE (Princeton)RINL
Genetics Home Reference (NIH)RINL
Genomic and cartography
GoldenPath hg38 (UCSC)RINL  -     chr19:38867832-38878279 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RINL  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblRINL - 19q13.2 [CytoView hg19]  RINL - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIRINL [Mapview hg19]  RINL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA653541 AA779599 AK124506 AK126119 AK127808
RefSeq transcript (Entrez)NM_001195833 NM_198445
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RINL
Cluster EST : UnigeneHs.446933 [ NCBI ]
CGAP (NCI)Hs.446933
Alternative Splicing GalleryENSG00000187994
Gene ExpressionRINL [ NCBI-GEO ]   RINL [ EBI - ARRAY_EXPRESS ]   RINL [ SEEK ]   RINL [ MEM ]
Gene Expression Viewer (FireBrowse)RINL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126432
GTEX Portal (Tissue expression)RINL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS11
Splice isoforms : SwissVarQ6ZS11
PhosPhoSitePlusQ6ZS11
Domaine pattern : Prosite (Expaxy)VPS9 (PS51205)   
Domains : Interpro (EBI)SH2    VPS9   
Domain families : Pfam (Sanger)VPS9 (PF02204)   
Domain families : Pfam (NCBI)pfam02204   
Domain families : Smart (EMBL)VPS9 (SM00167)  
Conserved Domain (NCBI)RINL
DMDM Disease mutations126432
Blocks (Seattle)RINL
SuperfamilyQ6ZS11
Human Protein AtlasENSG00000187994
Peptide AtlasQ6ZS11
HPRD13517
IPIIPI00976004   IPI00394804   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS11
IntAct (EBI)Q6ZS11
FunCoupENSG00000187994
BioGRIDRINL
STRING (EMBL)RINL
ZODIACRINL
Ontologies - Pathways
QuickGOQ6ZS11
Ontology : AmiGOruffle  guanyl-nucleotide exchange factor activity  GTPase activator activity  endocytosis  protein transport  actin cytoskeleton  cytoplasmic vesicle  positive regulation of GTPase activity  
Ontology : EGO-EBIruffle  guanyl-nucleotide exchange factor activity  GTPase activator activity  endocytosis  protein transport  actin cytoskeleton  cytoplasmic vesicle  positive regulation of GTPase activity  
NDEx NetworkRINL
Atlas of Cancer Signalling NetworkRINL
Wikipedia pathwaysRINL
Orthology - Evolution
OrthoDB126432
GeneTree (enSembl)ENSG00000187994
Phylogenetic Trees/Animal Genes : TreeFamRINL
HOVERGENQ6ZS11
HOGENOMQ6ZS11
Homologs : HomoloGeneRINL
Homology/Alignments : Family Browser (UCSC)RINL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRINL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RINL
dbVarRINL
ClinVarRINL
1000_GenomesRINL 
Exome Variant ServerRINL
ExAC (Exome Aggregation Consortium)RINL (select the gene name)
Genetic variants : HAPMAP126432
Genomic Variants (DGV)RINL [DGVbeta]
DECIPHERRINL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRINL 
Mutations
ICGC Data PortalRINL 
TCGA Data PortalRINL 
Broad Tumor PortalRINL
OASIS PortalRINL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRINL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRINL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RINL
DgiDB (Drug Gene Interaction Database)RINL
DoCM (Curated mutations)RINL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RINL (select a term)
intoGenRINL
Cancer3DRINL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRINL
Genetic Testing Registry RINL
NextProtQ6ZS11 [Medical]
TSGene126432
GENETestsRINL
Huge Navigator RINL [HugePedia]
snp3D : Map Gene to Disease126432
BioCentury BCIQRINL
ClinGenRINL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126432
Chemical/Pharm GKB GenePA162401347
Clinical trialRINL
Miscellaneous
canSAR (ICR)RINL (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRINL
EVEXRINL
GoPubMedRINL
iHOPRINL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:51:02 CEST 2017

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