Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RINT1 (RAD50 interactor 1)

Identity

Other namesRINT-1
HGNC (Hugo) RINT1
LocusID (NCBI) 60561
Location 7q22.3
Location_base_pair Starts at 105172532 and ends at 105208124 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RINT1   21876
Entrez_Gene (NCBI)RINT1  60561  RAD50 interactor 1
Cards
GeneCards (Weizmann)RINT1
Ensembl (Hinxton)ENSG00000135249 [Gene_View]  chr7:105172532-105208124 [Contig_View]  RINT1 [Vega]
AceView (NCBI)RINT1
Genatlas (Paris)RINT1
SOURCE (Stanford)NM_021930
Genomic and cartography
GoldenPath (UCSC)RINT1  -  7q22.3   chr7:105172532-105208124 +  7q22.3   [Description]    (hg19-Feb_2009)
EnsemblRINT1 - 7q22.3 [CytoView]
Mapping of homologs : NCBIRINT1 [Mapview]
OMIM610089   
Gene and transcription
Genbank (Entrez)AF317622 AK021847 AK055508 AK057757 AK308126
RefSeq transcript (SRS)NM_021930
RefSeq transcript (Entrez)NM_021930
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079596 NW_001839071 NW_004078032
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079596 NW_001839071 NW_004078032
Consensus coding sequences : CCDS (NCBI)RINT1
Cluster EST : UnigeneHs.531388 [ SRS ] Hs.531388 [ NCBI ]
CGAP (NCI)Hs.531388
Alternative Splicing : Fast-db (Paris)GSHG0027630
Alternative Splicing GalleryENSG00000135249
Gene ExpressionRINT1 [ NCBI-GEO ]   RINT1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUQ1 (SRS) Q6NUQ1 (Uniprot)
NextProtQ6NUQ1
With graphics : InterProQ6NUQ1
Splice isoforms : SwissVarQ6NUQ1(Swissvar)
Domaine pattern : Prosite (SRS)RINT1_TIP20 (PS51386)   
Domaine pattern : Prosite (Expaxy)RINT1_TIP20 (PS51386)   
Domains : Interpro (SRS)RINT1_TIP1   
Domains : Interpro (EBI)RINT1_TIP1   
Related proteins : CluSTrQ6NUQ1
Domain families : Pfam (SRS)RINT1_TIP1 (PF04437)   
Domain families : Pfam (Sanger)RINT1_TIP1 (PF04437)   
Domain families : Pfam (NCBI)pfam04437   
DMDM60561
Blocks (Seattle)Q6NUQ1
Human Protein AtlasENSG00000135249
HPRD15250
IPIIPI00072224   IPI00946466   IPI00945667   IPI00946903   IPI00946646   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUQ1
IntAct (EBI)Q6NUQ1
FunCoupENSG00000135249
REACTOMERINT1
Protein Interaction Database60561
BioGRIDRINT1
InParanoidQ6NUQ1
Interologous Interaction database Q6NUQ1
IntegromeDBRINT1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RINT1
SNP (GeneSNP Utah)RINT1
SNP : HGBaseRINT1
Genetic variants : HAPMAPRINT1
Somatic Mutations in Cancer : COSMICRINT1 
CONAN: Copy Number AnalysisRINT1 
Mutations and Diseases : HGMDRINT1
OMIM610089   
GENETests610089   
Disease Genetic AssociationRINT1
Huge Navigator RINT1 [HugePedia]  RINT1 [HugeCancerGEM]
Genomic VariantsRINT1  RINT1 [DGVbeta]
snp3D : Map Gene to Disease60561
General knowledge
Homologs : HomoloGeneRINT1
Homology/Alignments : Family Browser (UCSC)RINT1
Phylogenetic Trees/Animal Genes : TreeFamRINT1
Chemical/Protein Interactions : CTD60561
Chemical/Pharm GKB GenePA143485595
Clinical trialRINT1
Cancer Resource (Charite)ENSG00000135249
Ontology : AmiGOprotein binding  cytoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  cell cycle  protein transport  vesicle-mediated transport  G2/M transition DNA damage checkpoint  
Ontology : EGO-EBIprotein binding  cytoplasm  endoplasmic reticulum  endoplasmic reticulum membrane  cell cycle  protein transport  vesicle-mediated transport  G2/M transition DNA damage checkpoint  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneRINT1
iHOPRINT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:29:16 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.