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RIOX2 (ribosomal oxygenase 2)

Identity

Other aliasJMJD10
MDIG
MINA
MINA53
NO52
ROX
HGNC (Hugo) RIOX2
LocusID (NCBI) 84864
Atlas_Id 56707
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 97660661 and ends at 97691295 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RIOX2   19441
Cards
Entrez_Gene (NCBI)RIOX2  84864  ribosomal oxygenase 2
AliasesJMJD10; MDIG; MINA; MINA53; 
NO52; ROX
GeneCards (Weizmann)RIOX2
Ensembl hg19 (Hinxton) [Gene_View]  chr3:97660661-97691295 [Contig_View]  RIOX2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:97660661-97691295 [Contig_View]  RIOX2 [Vega]
TCGA cBioPortalRIOX2
AceView (NCBI)RIOX2
Genatlas (Paris)RIOX2
WikiGenes84864
SOURCE (Princeton)RIOX2
Genetics Home Reference (NIH)RIOX2
Genomic and cartography
GoldenPath hg19 (UCSC)RIOX2  -     chr3:97660661-97691295 -  3q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RIOX2  -     3q11.2   [Description]    (hg38-Dec_2013)
EnsemblRIOX2 - 3q11.2 [CytoView hg19]  RIOX2 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIRIOX2 [Mapview hg19]  RIOX2 [Mapview hg38]
OMIM612049   
Gene and transcription
Genbank (Entrez)AB083189 AB083190 AB083191 AB083192 AB083193
RefSeq transcript (Entrez)NM_001042533 NM_001261829 NM_032778 NM_153182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIOX2
Cluster EST : UnigeneHs.742206 [ NCBI ]
CGAP (NCI)Hs.742206
Gene ExpressionRIOX2 [ NCBI-GEO ]   RIOX2 [ EBI - ARRAY_EXPRESS ]   RIOX2 [ SEEK ]   RIOX2 [ MEM ]
Gene Expression Viewer (FireBrowse)RIOX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84864
GTEX Portal (Tissue expression)RIOX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUF8
Splice isoforms : SwissVarQ8IUF8
Catalytic activity : Enzyme1.14.11.- [ Enzyme-Expasy ]   1.14.11.-1.14.11.- [ IntEnz-EBI ]   1.14.11.- [ BRENDA ]   1.14.11.- [ KEGG ]   
PhosPhoSitePlusQ8IUF8
Domaine pattern : Prosite (Expaxy)JMJC (PS51184)   
Domains : Interpro (EBI)JmjC_dom   
Domain families : Pfam (Sanger)Cupin_4 (PF08007)   
Domain families : Pfam (NCBI)pfam08007   
Conserved Domain (NCBI)RIOX2
DMDM Disease mutations84864
Blocks (Seattle)RIOX2
PDB (SRS)2XDV    4BU2    4BXF   
PDB (PDBSum)2XDV    4BU2    4BXF   
PDB (IMB)2XDV    4BU2    4BXF   
PDB (RSDB)2XDV    4BU2    4BXF   
Structural Biology KnowledgeBase2XDV    4BU2    4BXF   
SCOP (Structural Classification of Proteins)2XDV    4BU2    4BXF   
CATH (Classification of proteins structures)2XDV    4BU2    4BXF   
SuperfamilyQ8IUF8
Peptide AtlasQ8IUF8
IPIIPI00216737   IPI00383332   IPI00868858   IPI00395527   IPI00966893   IPI00967414   IPI00967681   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUF8
IntAct (EBI)Q8IUF8
BioGRIDRIOX2
STRING (EMBL)RIOX2
ZODIACRIOX2
Ontologies - Pathways
QuickGOQ8IUF8
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II transcription factor binding  iron ion binding  nucleus  nucleus  transcription factor complex  nucleolus  cytoplasm  cytosol  transcription, DNA-templated  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  peptidyl-amino acid modification  ribosome biogenesis  identical protein binding  post-translational protein modification  negative regulation of transcription, DNA-templated  oxidation-reduction process  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II transcription factor binding  iron ion binding  nucleus  nucleus  transcription factor complex  nucleolus  cytoplasm  cytosol  transcription, DNA-templated  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  peptidyl-amino acid modification  ribosome biogenesis  identical protein binding  post-translational protein modification  negative regulation of transcription, DNA-templated  oxidation-reduction process  
NDEx NetworkRIOX2
Atlas of Cancer Signalling NetworkRIOX2
Wikipedia pathwaysRIOX2
Orthology - Evolution
OrthoDB84864
Phylogenetic Trees/Animal Genes : TreeFamRIOX2
HOVERGENQ8IUF8
HOGENOMQ8IUF8
Homologs : HomoloGeneRIOX2
Homology/Alignments : Family Browser (UCSC)RIOX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIOX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIOX2
dbVarRIOX2
ClinVarRIOX2
1000_GenomesRIOX2 
Exome Variant ServerRIOX2
ExAC (Exome Aggregation Consortium)RIOX2 (select the gene name)
Genetic variants : HAPMAP84864
Genomic Variants (DGV)RIOX2 [DGVbeta]
DECIPHER (Syndromes)3:97660661-97691295  
CONAN: Copy Number AnalysisRIOX2 
Mutations
ICGC Data PortalRIOX2 
TCGA Data PortalRIOX2 
Broad Tumor PortalRIOX2
OASIS PortalRIOX2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRIOX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIOX2
DgiDB (Drug Gene Interaction Database)RIOX2
DoCM (Curated mutations)RIOX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIOX2 (select a term)
intoGenRIOX2
Cancer3DRIOX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612049   
Orphanet
MedgenRIOX2
Genetic Testing Registry RIOX2
NextProtQ8IUF8 [Medical]
TSGene84864
GENETestsRIOX2
Huge Navigator RIOX2 [HugePedia]
snp3D : Map Gene to Disease84864
BioCentury BCIQRIOX2
ClinGenRIOX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84864
Chemical/Pharm GKB GenePA134991047
Clinical trialRIOX2
Miscellaneous
canSAR (ICR)RIOX2 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIOX2
EVEXRIOX2
GoPubMedRIOX2
iHOPRIOX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:25:08 CET 2017

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