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RIPOR1 (RHO family interacting cell polarization regulator 1)

Identity

Alias_namesFAM65A
family with sequence similarity 65, member A
family with sequence similarity 65 member A
Alias_symbol (synonym)FLJ13725
Other alias
HGNC (Hugo) RIPOR1
LocusID (NCBI) 79567
Atlas_Id 79379
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67528817 and ends at 67546788 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIPOR1   25836
Cards
Entrez_Gene (NCBI)RIPOR1  79567  RHO family interacting cell polarization regulator 1
AliasesFAM65A
GeneCards (Weizmann)RIPOR1
Ensembl hg19 (Hinxton)ENSG00000039523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000039523 [Gene_View]  chr16:67528817-67546788 [Contig_View]  RIPOR1 [Vega]
ICGC DataPortalENSG00000039523
TCGA cBioPortalRIPOR1
AceView (NCBI)RIPOR1
Genatlas (Paris)RIPOR1
WikiGenes79567
SOURCE (Princeton)RIPOR1
Genetics Home Reference (NIH)RIPOR1
Genomic and cartography
GoldenPath hg38 (UCSC)RIPOR1  -     chr16:67528817-67546788 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIPOR1  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblRIPOR1 - 16q22.1 [CytoView hg19]  RIPOR1 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIRIPOR1 [Mapview hg19]  RIPOR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067517 AK023787 AK097087 AK127792 AK293748
RefSeq transcript (Entrez)NM_001193522 NM_001193523 NM_001193524 NM_024519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIPOR1
Cluster EST : UnigeneHs.152717 [ NCBI ]
CGAP (NCI)Hs.152717
Alternative Splicing GalleryENSG00000039523
Gene ExpressionRIPOR1 [ NCBI-GEO ]   RIPOR1 [ EBI - ARRAY_EXPRESS ]   RIPOR1 [ SEEK ]   RIPOR1 [ MEM ]
Gene Expression Viewer (FireBrowse)RIPOR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79567
GTEX Portal (Tissue expression)RIPOR1
Human Protein AtlasENSG00000039523-RIPOR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS17
Splice isoforms : SwissVarQ6ZS17
PhosPhoSitePlusQ6ZS17
Domains : Interpro (EBI)ARM-like    ARM-type_fold    FAM65    FAM65_N   
Domain families : Pfam (Sanger)PL48 (PF15903)   
Domain families : Pfam (NCBI)pfam15903   
Conserved Domain (NCBI)RIPOR1
DMDM Disease mutations79567
Blocks (Seattle)RIPOR1
SuperfamilyQ6ZS17
Human Protein Atlas [tissue]ENSG00000039523-RIPOR1 [tissue]
Peptide AtlasQ6ZS17
IPIIPI00418799   IPI00793685   IPI00878206   IPI01008894   IPI00641076   IPI00807596   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS17
IntAct (EBI)Q6ZS17
FunCoupENSG00000039523
BioGRIDRIPOR1
STRING (EMBL)RIPOR1
ZODIACRIPOR1
Ontologies - Pathways
QuickGOQ6ZS17
Ontology : AmiGOprotein binding  cytoplasm  cytoplasm  Golgi apparatus  Rho protein signal transduction  cellular response to starvation  response to wounding  vesicle membrane  membrane  positive regulation of cell migration  protein localization to Golgi apparatus  establishment of Golgi localization  extracellular exosome  14-3-3 protein binding  positive regulation of intracellular protein transport  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoplasm  Golgi apparatus  Rho protein signal transduction  cellular response to starvation  response to wounding  vesicle membrane  membrane  positive regulation of cell migration  protein localization to Golgi apparatus  establishment of Golgi localization  extracellular exosome  14-3-3 protein binding  positive regulation of intracellular protein transport  
NDEx NetworkRIPOR1
Atlas of Cancer Signalling NetworkRIPOR1
Wikipedia pathwaysRIPOR1
Orthology - Evolution
OrthoDB79567
GeneTree (enSembl)ENSG00000039523
Phylogenetic Trees/Animal Genes : TreeFamRIPOR1
HOVERGENQ6ZS17
HOGENOMQ6ZS17
Homologs : HomoloGeneRIPOR1
Homology/Alignments : Family Browser (UCSC)RIPOR1
Gene fusions - Rearrangements
Tumor Fusion PortalRIPOR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIPOR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIPOR1
dbVarRIPOR1
ClinVarRIPOR1
1000_GenomesRIPOR1 
Exome Variant ServerRIPOR1
ExAC (Exome Aggregation Consortium)ENSG00000039523
GNOMAD BrowserENSG00000039523
Genetic variants : HAPMAP79567
Genomic Variants (DGV)RIPOR1 [DGVbeta]
DECIPHERRIPOR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIPOR1 
Mutations
ICGC Data PortalRIPOR1 
TCGA Data PortalRIPOR1 
Broad Tumor PortalRIPOR1
OASIS PortalRIPOR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRIPOR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIPOR1
DgiDB (Drug Gene Interaction Database)RIPOR1
DoCM (Curated mutations)RIPOR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIPOR1 (select a term)
intoGenRIPOR1
Cancer3DRIPOR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRIPOR1
MedgenRIPOR1
Genetic Testing Registry RIPOR1
NextProtQ6ZS17 [Medical]
TSGene79567
GENETestsRIPOR1
Target ValidationRIPOR1
Huge Navigator RIPOR1 [HugePedia]
snp3D : Map Gene to Disease79567
BioCentury BCIQRIPOR1
ClinGenRIPOR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79567
Chemical/Pharm GKB GenePA142671875
Clinical trialRIPOR1
Miscellaneous
canSAR (ICR)RIPOR1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIPOR1
EVEXRIPOR1
GoPubMedRIPOR1
iHOPRIPOR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:14 CET 2017

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