Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RIPOR3 (RIPOR family member 3)

Identity

Alias (NCBI)C20orf175
C20orf176
FAM65C
HGNC (Hugo) RIPOR3
HGNC Alias symbdJ530I15.2
dJ530I15.3
HGNC Previous nameC20orf175
 C20orf176
 FAM65C
HGNC Previous namechromosome 20 open reading frame 175
 chromosome 20 open reading frame 176
 family with sequence similarity 65, member C
 family with sequence similarity 65 member C
LocusID (NCBI) 140876
Atlas_Id 80238
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 50586110 and ends at 50636918 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIPOR3   16168
Cards
Entrez_Gene (NCBI)RIPOR3  140876  RIPOR family member 3
AliasesC20orf175; C20orf176; FAM65C
GeneCards (Weizmann)RIPOR3
Ensembl hg19 (Hinxton)ENSG00000042062 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000042062 [Gene_View]  ENSG00000042062 [Sequence]  chr20:50586110-50636918 [Contig_View]  RIPOR3 [Vega]
ICGC DataPortalENSG00000042062
TCGA cBioPortalRIPOR3
AceView (NCBI)RIPOR3
Genatlas (Paris)RIPOR3
WikiGenes140876
SOURCE (Princeton)RIPOR3
Genetics Home Reference (NIH)RIPOR3
Genomic and cartography
GoldenPath hg38 (UCSC)RIPOR3  -     chr20:50586110-50636918 -  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIPOR3  -     20q13.13   [Description]    (hg19-Feb_2009)
GoldenPathRIPOR3 - 20q13.13 [CytoView hg19]  RIPOR3 - 20q13.13 [CytoView hg38]
ImmunoBaseENSG00000042062
genome Data Viewer NCBIRIPOR3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI056877 AK056792 AK090440 AK124347 AK295781
RefSeq transcript (Entrez)NM_001290268 NM_080829
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIPOR3
Alternative Splicing GalleryENSG00000042062
Gene ExpressionRIPOR3 [ NCBI-GEO ]   RIPOR3 [ EBI - ARRAY_EXPRESS ]   RIPOR3 [ SEEK ]   RIPOR3 [ MEM ]
Gene Expression Viewer (FireBrowse)RIPOR3 [ Firebrowse - Broad ]
GenevisibleExpression of RIPOR3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140876
GTEX Portal (Tissue expression)RIPOR3
Human Protein AtlasENSG00000042062-RIPOR3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MK2
Splice isoforms : SwissVarQ96MK2
PhosPhoSitePlusQ96MK2
Domains : Interpro (EBI)FAM65_N    RIPOR3   
Domain families : Pfam (Sanger)PL48 (PF15903)   
Domain families : Pfam (NCBI)pfam15903   
Conserved Domain (NCBI)RIPOR3
DMDM Disease mutations140876
Blocks (Seattle)RIPOR3
SuperfamilyQ96MK2
Human Protein Atlas [tissue]ENSG00000042062-RIPOR3 [tissue]
Peptide AtlasQ96MK2
IPIIPI01009271   IPI00936569   IPI00065532   IPI00168750   
Protein Interaction databases
DIP (DOE-UCLA)Q96MK2
IntAct (EBI)Q96MK2
FunCoupENSG00000042062
BioGRIDRIPOR3
STRING (EMBL)RIPOR3
ZODIACRIPOR3
Ontologies - Pathways
QuickGOQ96MK2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRIPOR3
Atlas of Cancer Signalling NetworkRIPOR3
Wikipedia pathwaysRIPOR3
Orthology - Evolution
OrthoDB140876
GeneTree (enSembl)ENSG00000042062
Phylogenetic Trees/Animal Genes : TreeFamRIPOR3
HOGENOMQ96MK2
Homologs : HomoloGeneRIPOR3
Homology/Alignments : Family Browser (UCSC)RIPOR3
Gene fusions - Rearrangements
Fusion : QuiverRIPOR3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIPOR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIPOR3
dbVarRIPOR3
ClinVarRIPOR3
1000_GenomesRIPOR3 
Exome Variant ServerRIPOR3
GNOMAD BrowserENSG00000042062
Varsome BrowserRIPOR3
Genetic variants : HAPMAP140876
Genomic Variants (DGV)RIPOR3 [DGVbeta]
DECIPHERRIPOR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIPOR3 
Mutations
ICGC Data PortalRIPOR3 
TCGA Data PortalRIPOR3 
Broad Tumor PortalRIPOR3
OASIS PortalRIPOR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIPOR3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRIPOR3
Mutations and Diseases : HGMDRIPOR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RIPOR3
DgiDB (Drug Gene Interaction Database)RIPOR3
DoCM (Curated mutations)RIPOR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIPOR3 (select a term)
intoGenRIPOR3
Cancer3DRIPOR3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRIPOR3
MedgenRIPOR3
Genetic Testing Registry RIPOR3
NextProtQ96MK2 [Medical]
TSGene140876
GENETestsRIPOR3
Target ValidationRIPOR3
Huge Navigator RIPOR3 [HugePedia]
snp3D : Map Gene to Disease140876
BioCentury BCIQRIPOR3
ClinGenRIPOR3
Clinical trials, drugs, therapy
Protein Interactions : CTD140876
Pharm GKB GenePA162387710
Clinical trialRIPOR3
Miscellaneous
canSAR (ICR)RIPOR3 (select the gene name)
HarmonizomeRIPOR3
DataMed IndexRIPOR3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIPOR3
EVEXRIPOR3
GoPubMedRIPOR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:25:20 CEST 2020

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