Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RIPPLY1 (ripply transcriptional repressor 1)

Identity

Alias_namesripply1 homolog (zebrafish)
Other alias-
HGNC (Hugo) RIPPLY1
LocusID (NCBI) 92129
Atlas_Id 72653
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 106900063 and ends at 106903331 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RIPPLY1   25117
Cards
Entrez_Gene (NCBI)RIPPLY1  92129  ripply transcriptional repressor 1
Aliases
GeneCards (Weizmann)RIPPLY1
Ensembl hg19 (Hinxton)ENSG00000147223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147223 [Gene_View]  chrX:106900063-106903331 [Contig_View]  RIPPLY1 [Vega]
ICGC DataPortalENSG00000147223
TCGA cBioPortalRIPPLY1
AceView (NCBI)RIPPLY1
Genatlas (Paris)RIPPLY1
WikiGenes92129
SOURCE (Princeton)RIPPLY1
Genetics Home Reference (NIH)RIPPLY1
Genomic and cartography
GoldenPath hg38 (UCSC)RIPPLY1  -     chrX:106900063-106903331 -  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RIPPLY1  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblRIPPLY1 - Xq22.3 [CytoView hg19]  RIPPLY1 - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBIRIPPLY1 [Mapview hg19]  RIPPLY1 [Mapview hg38]
OMIM300575   
Gene and transcription
Genbank (Entrez)BC007652 BC101998 BC105691 BC105692 BC110436
RefSeq transcript (Entrez)NM_001171706 NM_138382
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RIPPLY1
Cluster EST : UnigeneHs.334726 [ NCBI ]
CGAP (NCI)Hs.334726
Alternative Splicing GalleryENSG00000147223
Gene ExpressionRIPPLY1 [ NCBI-GEO ]   RIPPLY1 [ EBI - ARRAY_EXPRESS ]   RIPPLY1 [ SEEK ]   RIPPLY1 [ MEM ]
Gene Expression Viewer (FireBrowse)RIPPLY1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92129
GTEX Portal (Tissue expression)RIPPLY1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0D2K3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0D2K3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0D2K3
Splice isoforms : SwissVarQ0D2K3
PhosPhoSitePlusQ0D2K3
Domains : Interpro (EBI)Ripply_fam   
Domain families : Pfam (Sanger)Ripply (PF14998)   
Domain families : Pfam (NCBI)pfam14998   
Conserved Domain (NCBI)RIPPLY1
DMDM Disease mutations92129
Blocks (Seattle)RIPPLY1
SuperfamilyQ0D2K3
Human Protein AtlasENSG00000147223
Peptide AtlasQ0D2K3
IPIIPI00063522   IPI00553219   
Protein Interaction databases
DIP (DOE-UCLA)Q0D2K3
IntAct (EBI)Q0D2K3
FunCoupENSG00000147223
BioGRIDRIPPLY1
STRING (EMBL)RIPPLY1
ZODIACRIPPLY1
Ontologies - Pathways
QuickGOQ0D2K3
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  somite specification  protein binding  nucleus  nucleus  transcription, DNA-templated  Notch signaling pathway  embryonic pattern specification  embryonic pattern specification  somite rostral/caudal axis specification  negative regulation of transcription, DNA-templated  bone morphogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  somite specification  protein binding  nucleus  nucleus  transcription, DNA-templated  Notch signaling pathway  embryonic pattern specification  embryonic pattern specification  somite rostral/caudal axis specification  negative regulation of transcription, DNA-templated  bone morphogenesis  
NDEx NetworkRIPPLY1
Atlas of Cancer Signalling NetworkRIPPLY1
Wikipedia pathwaysRIPPLY1
Orthology - Evolution
OrthoDB92129
GeneTree (enSembl)ENSG00000147223
Phylogenetic Trees/Animal Genes : TreeFamRIPPLY1
HOVERGENQ0D2K3
HOGENOMQ0D2K3
Homologs : HomoloGeneRIPPLY1
Homology/Alignments : Family Browser (UCSC)RIPPLY1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRIPPLY1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RIPPLY1
dbVarRIPPLY1
ClinVarRIPPLY1
1000_GenomesRIPPLY1 
Exome Variant ServerRIPPLY1
ExAC (Exome Aggregation Consortium)RIPPLY1 (select the gene name)
Genetic variants : HAPMAP92129
Genomic Variants (DGV)RIPPLY1 [DGVbeta]
DECIPHERRIPPLY1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRIPPLY1 
Mutations
ICGC Data PortalRIPPLY1 
TCGA Data PortalRIPPLY1 
Broad Tumor PortalRIPPLY1
OASIS PortalRIPPLY1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRIPPLY1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRIPPLY1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RIPPLY1
DgiDB (Drug Gene Interaction Database)RIPPLY1
DoCM (Curated mutations)RIPPLY1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RIPPLY1 (select a term)
intoGenRIPPLY1
Cancer3DRIPPLY1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300575   
Orphanet
MedgenRIPPLY1
Genetic Testing Registry RIPPLY1
NextProtQ0D2K3 [Medical]
TSGene92129
GENETestsRIPPLY1
Target ValidationRIPPLY1
Huge Navigator RIPPLY1 [HugePedia]
snp3D : Map Gene to Disease92129
BioCentury BCIQRIPPLY1
ClinGenRIPPLY1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92129
Chemical/Pharm GKB GenePA162401348
Clinical trialRIPPLY1
Miscellaneous
canSAR (ICR)RIPPLY1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRIPPLY1
EVEXRIPPLY1
GoPubMedRIPPLY1
iHOPRIPPLY1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:44 CEST 2017

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