Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RIT1 (Ras-like without CAAX 1)

Identity

Other namesRIBB
RIT
ROC1
HGNC (Hugo) RIT1
LocusID (NCBI) 6016
Location 1q22
Location_base_pair Starts at 155867599 and ends at 155881193 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RIT1   10023
Entrez_Gene (NCBI)RIT1  6016  Ras-like without CAAX 1
Cards
GeneCards (Weizmann)RIT1
Ensembl (Hinxton)ENSG00000143622 [Gene_View]  chr1:155867599-155881193 [Contig_View]  RIT1 [Vega]
AceView (NCBI)RIT1
Genatlas (Paris)RIT1
SOURCE (Stanford)NM_001256820 NM_001256821 NM_006912
Genomic and cartography
GoldenPath (UCSC)RIT1  -  1q22   chr1:155867599-155881193 -  1q22   [Description]    (hg19-Feb_2009)
EnsemblRIT1 - 1q22 [CytoView]
Mapping of homologs : NCBIRIT1 [Mapview]
OMIM609591   
Gene and transcription
Genbank (Entrez)AF084462 AF493923 AK298768 AK314239 BC104186
RefSeq transcript (SRS)NM_001256820 NM_001256821 NM_006912
RefSeq transcript (Entrez)NM_001256820 NM_001256821 NM_006912
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838531 NW_004077999
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838531 NW_004077999
Consensus coding sequences : CCDS (NCBI)RIT1
Cluster EST : UnigeneHs.491234 [ SRS ] Hs.491234 [ NCBI ]
CGAP (NCI)Hs.491234
Alternative Splicing : Fast-db (Paris)GSHG0002597
Alternative Splicing GalleryENSG00000143622
Gene ExpressionRIT1 [ NCBI-GEO ]   RIT1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92963 (SRS) Q92963 (Uniprot)
NextProtQ92963
With graphics : InterProQ92963
Splice isoforms : SwissVarQ92963(Swissvar)
Domaine pattern : Prosite (SRS)RAS (PS51421)   
Domaine pattern : Prosite (Expaxy)RAS (PS51421)   
Domains : Interpro (SRS)Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Ras   
Domains : Interpro (EBI)Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Ras   
Related proteins : CluSTrQ92963
Domain families : Pfam (SRS)Ras (PF00071)   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAS (SM00173)  
DMDM6016
Blocks (Seattle)Q92963
Human Protein AtlasENSG00000143622
HPRD10195
IPIIPI00144289   IPI01012532   IPI00639824   
Protein Interaction databases
DIP (DOE-UCLA)Q92963
IntAct (EBI)Q92963
FunCoupENSG00000143622
REACTOMERIT1
Protein Interaction Database6016
BioGRIDRIT1
InParanoidQ92963
Interologous Interaction database Q92963
IntegromeDBRIT1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RIT1
SNP (GeneSNP Utah)RIT1
SNP : HGBaseRIT1
Genetic variants : HAPMAPRIT1
Somatic Mutations in Cancer : COSMICRIT1 
CONAN: Copy Number AnalysisRIT1 
Mutations and Diseases : HGMDRIT1
OMIM609591   
GENETests609591   
Disease Genetic AssociationRIT1
Huge Navigator RIT1 [HugePedia]  RIT1 [HugeCancerGEM]
Genomic VariantsRIT1  RIT1 [DGVbeta]
snp3D : Map Gene to Disease6016
General knowledge
Homologs : HomoloGeneRIT1
Homology/Alignments : Family Browser (UCSC)RIT1
Phylogenetic Trees/Animal Genes : TreeFamRIT1
Chemical/Protein Interactions : CTD6016
Chemical/Pharm GKB GenePA35528
Clinical trialRIT1
Cancer Resource (Charite)ENSG00000143622
Ontology : AmiGOGTPase activity  protein binding  calmodulin binding  GTP binding  plasma membrane  signal transduction  small GTPase mediated signal transduction  nerve growth factor receptor signaling pathway  
Ontology : EGO-EBIGTPase activity  protein binding  calmodulin binding  GTP binding  plasma membrane  signal transduction  small GTPase mediated signal transduction  nerve growth factor receptor signaling pathway  
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
PubGeneRIT1
iHOPRIT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:36:03 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.