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RITA1 (RBPJ interacting and tubulin associated 1)

Identity

Alias_namesC12orf52
chromosome 12 open reading frame 52
Alias_symbol (synonym)FLJ14827
RITA
Other alias
HGNC (Hugo) RITA1
LocusID (NCBI) 84934
Atlas_Id 53683
Location 12q24.13  [Link to chromosome band 12q24]
Location_base_pair Starts at 113185526 and ends at 113192368 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RITA1 (12q24.13) / GRHL2 (8q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RITA1   25925
Cards
Entrez_Gene (NCBI)RITA1  84934  RBPJ interacting and tubulin associated 1
AliasesC12orf52; RITA
GeneCards (Weizmann)RITA1
Ensembl hg19 (Hinxton)ENSG00000139405 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139405 [Gene_View]  chr12:113185526-113192368 [Contig_View]  RITA1 [Vega]
ICGC DataPortalENSG00000139405
TCGA cBioPortalRITA1
AceView (NCBI)RITA1
Genatlas (Paris)RITA1
WikiGenes84934
SOURCE (Princeton)RITA1
Genetics Home Reference (NIH)RITA1
Genomic and cartography
GoldenPath hg38 (UCSC)RITA1  -     chr12:113185526-113192368 +  12q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RITA1  -     12q24.13   [Description]    (hg19-Feb_2009)
EnsemblRITA1 - 12q24.13 [CytoView hg19]  RITA1 - 12q24.13 [CytoView hg38]
Mapping of homologs : NCBIRITA1 [Mapview hg19]  RITA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA594422 AK027733 AK027741 AK075358 AK123762
RefSeq transcript (Entrez)NM_001286215 NM_032848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RITA1
Cluster EST : UnigeneHs.524762 [ NCBI ]
CGAP (NCI)Hs.524762
Alternative Splicing GalleryENSG00000139405
Gene ExpressionRITA1 [ NCBI-GEO ]   RITA1 [ EBI - ARRAY_EXPRESS ]   RITA1 [ SEEK ]   RITA1 [ MEM ]
Gene Expression Viewer (FireBrowse)RITA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84934
GTEX Portal (Tissue expression)RITA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96K30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96K30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96K30
Splice isoforms : SwissVarQ96K30
PhosPhoSitePlusQ96K30
Domains : Interpro (EBI)RITA1   
Domain families : Pfam (Sanger)RITA (PF17066)   
Domain families : Pfam (NCBI)pfam17066   
Conserved Domain (NCBI)RITA1
DMDM Disease mutations84934
Blocks (Seattle)RITA1
SuperfamilyQ96K30
Human Protein AtlasENSG00000139405
Peptide AtlasQ96K30
HPRD08606
IPIIPI00064350   IPI01022798   IPI01022211   IPI00098109   
Protein Interaction databases
DIP (DOE-UCLA)Q96K30
IntAct (EBI)Q96K30
FunCoupENSG00000139405
BioGRIDRITA1
STRING (EMBL)RITA1
ZODIACRITA1
Ontologies - Pathways
QuickGOQ96K30
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  protein binding  nucleus  cytoplasm  centrosome  Notch signaling pathway  tubulin binding  neurogenesis  negative regulation of Notch signaling pathway  nuclear export  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  protein binding  nucleus  cytoplasm  centrosome  Notch signaling pathway  tubulin binding  neurogenesis  negative regulation of Notch signaling pathway  nuclear export  
NDEx NetworkRITA1
Atlas of Cancer Signalling NetworkRITA1
Wikipedia pathwaysRITA1
Orthology - Evolution
OrthoDB84934
GeneTree (enSembl)ENSG00000139405
Phylogenetic Trees/Animal Genes : TreeFamRITA1
HOVERGENQ96K30
HOGENOMQ96K30
Homologs : HomoloGeneRITA1
Homology/Alignments : Family Browser (UCSC)RITA1
Gene fusions - Rearrangements
Fusion : MitelmanRITA1/GRHL2 [12q24.13/8q22.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRITA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RITA1
dbVarRITA1
ClinVarRITA1
1000_GenomesRITA1 
Exome Variant ServerRITA1
ExAC (Exome Aggregation Consortium)RITA1 (select the gene name)
Genetic variants : HAPMAP84934
Genomic Variants (DGV)RITA1 [DGVbeta]
DECIPHERRITA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRITA1 
Mutations
ICGC Data PortalRITA1 
TCGA Data PortalRITA1 
Broad Tumor PortalRITA1
OASIS PortalRITA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRITA1
BioMutasearch RITA1
DgiDB (Drug Gene Interaction Database)RITA1
DoCM (Curated mutations)RITA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RITA1 (select a term)
intoGenRITA1
Cancer3DRITA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRITA1
Genetic Testing Registry RITA1
NextProtQ96K30 [Medical]
TSGene84934
GENETestsRITA1
Huge Navigator RITA1 [HugePedia]
snp3D : Map Gene to Disease84934
BioCentury BCIQRITA1
ClinGenRITA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84934
Chemical/Pharm GKB GenePA143485381
Clinical trialRITA1
Miscellaneous
canSAR (ICR)RITA1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRITA1
EVEXRITA1
GoPubMedRITA1
iHOPRITA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:05 CEST 2017

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