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RLBP1 (retinaldehyde binding protein 1)

Identity

Alias_namesretinaldehyde-binding protein 1
Alias_symbol (synonym)CRALBP
Other alias
HGNC (Hugo) RLBP1
LocusID (NCBI) 6017
Atlas_Id 54850
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 89209867 and ends at 89221691 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RLBP1 (15q26.1) / RLBP1 (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RLBP1   10024
Cards
Entrez_Gene (NCBI)RLBP1  6017  retinaldehyde binding protein 1
AliasesCRALBP
GeneCards (Weizmann)RLBP1
Ensembl hg19 (Hinxton)ENSG00000140522 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140522 [Gene_View]  chr15:89209867-89221691 [Contig_View]  RLBP1 [Vega]
ICGC DataPortalENSG00000140522
TCGA cBioPortalRLBP1
AceView (NCBI)RLBP1
Genatlas (Paris)RLBP1
WikiGenes6017
SOURCE (Princeton)RLBP1
Genetics Home Reference (NIH)RLBP1
Genomic and cartography
GoldenPath hg38 (UCSC)RLBP1  -     chr15:89209867-89221691 -  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RLBP1  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblRLBP1 - 15q26.1 [CytoView hg19]  RLBP1 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIRLBP1 [Mapview hg19]  RLBP1 [Mapview hg38]
OMIM136880   180090   607475   607476   
Gene and transcription
Genbank (Entrez)AK312457 BC004199 BF940774 BG205561 BM704704
RefSeq transcript (Entrez)NM_000326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RLBP1
Cluster EST : UnigeneHs.1933 [ NCBI ]
CGAP (NCI)Hs.1933
Alternative Splicing GalleryENSG00000140522
Gene ExpressionRLBP1 [ NCBI-GEO ]   RLBP1 [ EBI - ARRAY_EXPRESS ]   RLBP1 [ SEEK ]   RLBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RLBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6017
GTEX Portal (Tissue expression)RLBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12271   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP12271  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP12271
Splice isoforms : SwissVarP12271
PhosPhoSitePlusP12271
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)   
Domains : Interpro (EBI)CRAL-bd_toc_tran    CRAL-TRIO_dom    CRAL/TRIO_N_dom    RLBP1   
Domain families : Pfam (Sanger)CRAL_TRIO (PF00650)    CRAL_TRIO_N (PF03765)   
Domain families : Pfam (NCBI)pfam00650    pfam03765   
Domain families : Smart (EMBL)CRAL_TRIO_N (SM01100)  SEC14 (SM00516)  
Conserved Domain (NCBI)RLBP1
DMDM Disease mutations6017
Blocks (Seattle)RLBP1
PDB (SRS)1XGG    1XGH    3HX3    3HY5    4CIZ    4CJ6   
PDB (PDBSum)1XGG    1XGH    3HX3    3HY5    4CIZ    4CJ6   
PDB (IMB)1XGG    1XGH    3HX3    3HY5    4CIZ    4CJ6   
PDB (RSDB)1XGG    1XGH    3HX3    3HY5    4CIZ    4CJ6   
Structural Biology KnowledgeBase1XGG    1XGH    3HX3    3HY5    4CIZ    4CJ6   
SCOP (Structural Classification of Proteins)1XGG    1XGH    3HX3    3HY5    4CIZ    4CJ6   
CATH (Classification of proteins structures)1XGG    1XGH    3HX3    3HY5    4CIZ    4CJ6   
SuperfamilyP12271
Human Protein AtlasENSG00000140522
Peptide AtlasP12271
HPRD01572
IPIIPI00218633   
Protein Interaction databases
DIP (DOE-UCLA)P12271
IntAct (EBI)P12271
FunCoupENSG00000140522
BioGRIDRLBP1
STRING (EMBL)RLBP1
ZODIACRLBP1
Ontologies - Pathways
QuickGOP12271
Ontology : AmiGOretinoid metabolic process  transporter activity  11-cis retinal binding  cellular_component  cytosol  vitamin A metabolic process  transport  visual perception  retinol binding  cell body  response to stimulus  
Ontology : EGO-EBIretinoid metabolic process  transporter activity  11-cis retinal binding  cellular_component  cytosol  vitamin A metabolic process  transport  visual perception  retinol binding  cell body  response to stimulus  
NDEx NetworkRLBP1
Atlas of Cancer Signalling NetworkRLBP1
Wikipedia pathwaysRLBP1
Orthology - Evolution
OrthoDB6017
GeneTree (enSembl)ENSG00000140522
Phylogenetic Trees/Animal Genes : TreeFamRLBP1
HOVERGENP12271
HOGENOMP12271
Homologs : HomoloGeneRLBP1
Homology/Alignments : Family Browser (UCSC)RLBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRLBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RLBP1
dbVarRLBP1
ClinVarRLBP1
1000_GenomesRLBP1 
Exome Variant ServerRLBP1
ExAC (Exome Aggregation Consortium)RLBP1 (select the gene name)
Genetic variants : HAPMAP6017
Genomic Variants (DGV)RLBP1 [DGVbeta]
DECIPHERRLBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRLBP1 
Mutations
ICGC Data PortalRLBP1 
TCGA Data PortalRLBP1 
Broad Tumor PortalRLBP1
OASIS PortalRLBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRLBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRLBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch RLBP1
DgiDB (Drug Gene Interaction Database)RLBP1
DoCM (Curated mutations)RLBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RLBP1 (select a term)
intoGenRLBP1
Cancer3DRLBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM136880    180090    607475    607476   
Orphanet659    19056    10695    11624   
MedgenRLBP1
Genetic Testing Registry RLBP1
NextProtP12271 [Medical]
TSGene6017
GENETestsRLBP1
Target ValidationRLBP1
Huge Navigator RLBP1 [HugePedia]
snp3D : Map Gene to Disease6017
BioCentury BCIQRLBP1
ClinGenRLBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6017
Chemical/Pharm GKB GenePA34397
Clinical trialRLBP1
Miscellaneous
canSAR (ICR)RLBP1 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRLBP1
EVEXRLBP1
GoPubMedRLBP1
iHOPRLBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:22 CEST 2017

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