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RLF (rearranged L-myc fusion)

Identity

Other namesZN-15L
ZNF292L
HGNC (Hugo) RLF
LocusID (NCBI) 6018
Location 1p34.2
Location_base_pair Starts at 40627041 and ends at 40706593 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RLF   10025
Cards
Entrez_Gene (NCBI)RLF  6018  rearranged L-myc fusion
GeneCards (Weizmann)RLF
Ensembl (Hinxton)ENSG00000117000 [Gene_View]  chr1:40627041-40706593 [Contig_View]  RLF [Vega]
AceView (NCBI)RLF
Genatlas (Paris)RLF
WikiGenes6018
SOURCE (Princeton)NM_012421
Genomic and cartography
GoldenPath (UCSC)RLF  -  1p34.2   chr1:40627041-40706593 +  1p34.2   [Description]    (hg19-Feb_2009)
EnsemblRLF - 1p34.2 [CytoView]
Mapping of homologs : NCBIRLF [Mapview]
OMIM180610   
Gene and transcription
Genbank (Entrez)AB209099 AK307662 BC113666 BM542854 HQ258544
RefSeq transcript (Entrez)NM_012421
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838577 NW_004929290
Consensus coding sequences : CCDS (NCBI)RLF
Cluster EST : UnigeneHs.205627 [ NCBI ]
CGAP (NCI)Hs.205627
Alternative Splicing : Fast-db (Paris)GSHG0000411
Alternative Splicing GalleryENSG00000117000
Gene ExpressionRLF [ NCBI-GEO ]     RLF [ SEEK ]   RLF [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13129 (Uniprot)
NextProtQ13129  [Medical]
With graphics : InterProQ13129
Splice isoforms : SwissVarQ13129 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ13129
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations6018
Blocks (Seattle)Q13129
Human Protein AtlasENSG00000117000
Peptide AtlasQ13129
HPRD01614
IPIIPI00018294   IPI01010914   
Protein Interaction databases
DIP (DOE-UCLA)Q13129
IntAct (EBI)Q13129
FunCoupENSG00000117000
BioGRIDRLF
InParanoidQ13129
Interologous Interaction database Q13129
IntegromeDBRLF
STRING (EMBL)RLF
Ontologies - Pathways
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-dependent  zinc ion binding  DNA mediated transformation  DNA integration  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  chromosome organization  chromosome organization  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-dependent  zinc ion binding  DNA mediated transformation  DNA integration  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  chromosome organization  chromosome organization  
REACTOMERLF
Protein Interaction DatabaseRLF
Wikipedia pathwaysRLF
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RLF
SNP (GeneSNP Utah)RLF
SNP : HGBaseRLF
Genetic variants : HAPMAPRLF
1000_GenomesRLF 
ICGC programENSG00000117000 
Somatic Mutations in Cancer : COSMICRLF 
CONAN: Copy Number AnalysisRLF 
Mutations and Diseases : HGMDRLF
OMIM180610   
GENETestsRLF
Disease Genetic AssociationRLF
Huge Navigator RLF [HugePedia]  RLF [HugeCancerGEM]
Genomic VariantsRLF  RLF [DGVbeta]
Exome VariantRLF
dbVarRLF
ClinVarRLF
snp3D : Map Gene to Disease6018
General knowledge
Homologs : HomoloGeneRLF
Homology/Alignments : Family Browser (UCSC)RLF
Phylogenetic Trees/Animal Genes : TreeFamRLF
Chemical/Protein Interactions : CTD6018
Chemical/Pharm GKB GenePA34398
Clinical trialRLF
Cancer Resource (Charite)ENSG00000117000
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
CoreMineRLF
iHOPRLF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:07:01 CEST 2014

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