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RLIM (ring finger protein, LIM domain interacting)

Identity

Alias_namesRNF12
ring finger protein 12
Alias_symbol (synonym)NY-REN-43
MGC15161
Other alias
HGNC (Hugo) RLIM
LocusID (NCBI) 51132
Atlas_Id 42127
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73802811 and ends at 73834461 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RLIM (Xq13.2) / LRRC24 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RLIM   13429
Cards
Entrez_Gene (NCBI)RLIM  51132  ring finger protein, LIM domain interacting
AliasesNY-REN-43; RNF12
GeneCards (Weizmann)RLIM
Ensembl hg19 (Hinxton)ENSG00000131263 [Gene_View]  chrX:73802811-73834461 [Contig_View]  RLIM [Vega]
Ensembl hg38 (Hinxton)ENSG00000131263 [Gene_View]  chrX:73802811-73834461 [Contig_View]  RLIM [Vega]
ICGC DataPortalENSG00000131263
TCGA cBioPortalRLIM
AceView (NCBI)RLIM
Genatlas (Paris)RLIM
WikiGenes51132
SOURCE (Princeton)RLIM
Genetics Home Reference (NIH)RLIM
Genomic and cartography
GoldenPath hg19 (UCSC)RLIM  -     chrX:73802811-73834461 -  Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RLIM  -     Xq13.2   [Description]    (hg38-Dec_2013)
EnsemblRLIM - Xq13.2 [CytoView hg19]  RLIM - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBIRLIM [Mapview hg19]  RLIM [Mapview hg38]
OMIM300379   
Gene and transcription
Genbank (Entrez)AF086467 AF155109 AI968256 AK001334 AK098789
RefSeq transcript (Entrez)NM_016120 NM_183353
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_013258 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)RLIM
Cluster EST : UnigeneHs.653288 [ NCBI ]
CGAP (NCI)Hs.653288
Alternative Splicing GalleryENSG00000131263
Gene ExpressionRLIM [ NCBI-GEO ]   RLIM [ EBI - ARRAY_EXPRESS ]   RLIM [ SEEK ]   RLIM [ MEM ]
Gene Expression Viewer (FireBrowse)RLIM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51132
GTEX Portal (Tissue expression)RLIM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVW2
Splice isoforms : SwissVarQ9NVW2
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
PhosPhoSitePlusQ9NVW2
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RLIM
DMDM Disease mutations51132
Blocks (Seattle)RLIM
SuperfamilyQ9NVW2
Human Protein AtlasENSG00000131263
Peptide AtlasQ9NVW2
HPRD02304
IPIIPI00060628   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVW2
IntAct (EBI)Q9NVW2
FunCoupENSG00000131263
BioGRIDRLIM
STRING (EMBL)RLIM
ZODIACRLIM
Ontologies - Pathways
QuickGOQ9NVW2
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  protein polyubiquitination  transcription corepressor activity  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  nucleus  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  ubiquitin-dependent protein catabolic process  zinc ion binding  protein ubiquitination  ligase activity  transcriptional repressor complex  proteasome-mediated ubiquitin-dependent protein catabolic process  negative regulation of sequence-specific DNA binding transcription factor activity  negative regulation of transcription, DNA-templated  random inactivation of X chromosome  ubiquitin protein ligase activity  regulation of dosage compensation by inactivation of X chromosome  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  protein polyubiquitination  transcription corepressor activity  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  nucleus  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  ubiquitin-dependent protein catabolic process  zinc ion binding  protein ubiquitination  ligase activity  transcriptional repressor complex  proteasome-mediated ubiquitin-dependent protein catabolic process  negative regulation of sequence-specific DNA binding transcription factor activity  negative regulation of transcription, DNA-templated  random inactivation of X chromosome  ubiquitin protein ligase activity  regulation of dosage compensation by inactivation of X chromosome  
NDEx NetworkRLIM
Atlas of Cancer Signalling NetworkRLIM
Wikipedia pathwaysRLIM
Orthology - Evolution
OrthoDB51132
GeneTree (enSembl)ENSG00000131263
Phylogenetic Trees/Animal Genes : TreeFamRLIM
HOVERGENQ9NVW2
HOGENOMQ9NVW2
Homologs : HomoloGeneRLIM
Homology/Alignments : Family Browser (UCSC)RLIM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRLIM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RLIM
dbVarRLIM
ClinVarRLIM
1000_GenomesRLIM 
Exome Variant ServerRLIM
ExAC (Exome Aggregation Consortium)RLIM (select the gene name)
Genetic variants : HAPMAP51132
Genomic Variants (DGV)RLIM [DGVbeta]
DECIPHER (Syndromes)X:73802811-73834461  ENSG00000131263
CONAN: Copy Number AnalysisRLIM 
Mutations
ICGC Data PortalRLIM 
TCGA Data PortalRLIM 
Broad Tumor PortalRLIM
OASIS PortalRLIM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRLIM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRLIM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RLIM
DgiDB (Drug Gene Interaction Database)RLIM
DoCM (Curated mutations)RLIM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RLIM (select a term)
intoGenRLIM
Cancer3DRLIM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300379   
Orphanet
MedgenRLIM
Genetic Testing Registry RLIM
NextProtQ9NVW2 [Medical]
TSGene51132
GENETestsRLIM
Huge Navigator RLIM [HugePedia]
snp3D : Map Gene to Disease51132
BioCentury BCIQRLIM
ClinGenRLIM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51132
Chemical/Pharm GKB GenePA164725373
Clinical trialRLIM
Miscellaneous
canSAR (ICR)RLIM (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRLIM
EVEXRLIM
GoPubMedRLIM
iHOPRLIM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:17:33 CEST 2017

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