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RLTPR (RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing)

Identity

Other aliasCARMIL2
CARMIL2b
LRRC16C
HGNC (Hugo) RLTPR
LocusID (NCBI) 146206
Atlas_Id 72656
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67679030 and ends at 67691472 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DUS2 (16q22.1) / RLTPR (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RLTPR   27089
Cards
Entrez_Gene (NCBI)RLTPR  146206  RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing
AliasesCARMIL2; CARMIL2b; LRRC16C
GeneCards (Weizmann)RLTPR
Ensembl hg19 (Hinxton)ENSG00000159753 [Gene_View]  chr16:67679030-67691472 [Contig_View]  RLTPR [Vega]
Ensembl hg38 (Hinxton)ENSG00000159753 [Gene_View]  chr16:67679030-67691472 [Contig_View]  RLTPR [Vega]
ICGC DataPortalENSG00000159753
TCGA cBioPortalRLTPR
AceView (NCBI)RLTPR
Genatlas (Paris)RLTPR
WikiGenes146206
SOURCE (Princeton)RLTPR
Genetics Home Reference (NIH)RLTPR
Genomic and cartography
GoldenPath hg19 (UCSC)RLTPR  -     chr16:67679030-67691472 +  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RLTPR  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblRLTPR - 16q22.1 [CytoView hg19]  RLTPR - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIRLTPR [Mapview hg19]  RLTPR [Mapview hg38]
OMIM610859   
Gene and transcription
Genbank (Entrez)AB113647 AK090421 AL832446 BC043154 BC172249
RefSeq transcript (Entrez)NM_001013838
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)RLTPR
Cluster EST : UnigeneHs.611432 [ NCBI ]
CGAP (NCI)Hs.611432
Alternative Splicing GalleryENSG00000159753
Gene ExpressionRLTPR [ NCBI-GEO ]   RLTPR [ EBI - ARRAY_EXPRESS ]   RLTPR [ SEEK ]   RLTPR [ MEM ]
Gene Expression Viewer (FireBrowse)RLTPR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146206
GTEX Portal (Tissue expression)RLTPR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6F5E8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6F5E8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6F5E8
Splice isoforms : SwissVarQ6F5E8
PhosPhoSitePlusQ6F5E8
Domains : Interpro (EBI)CARMIL2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RLTPR
DMDM Disease mutations146206
Blocks (Seattle)RLTPR
SuperfamilyQ6F5E8
Human Protein AtlasENSG00000159753
Peptide AtlasQ6F5E8
HPRD18556
IPIIPI00456628   IPI01015638   IPI00743882   IPI00168768   
Protein Interaction databases
DIP (DOE-UCLA)Q6F5E8
IntAct (EBI)Q6F5E8
FunCoupENSG00000159753
BioGRIDRLTPR
STRING (EMBL)RLTPR
ZODIACRLTPR
Ontologies - Pathways
QuickGOQ6F5E8
Ontology : AmiGOimmunological synapse  cytoplasm  cell-cell junction  F-actin capping protein complex  membrane  cell migration  maintenance of cell polarity  positive regulation of T cell proliferation  establishment of protein localization  positive regulation of regulatory T cell differentiation  thymus development  homeostasis of number of cells  T cell receptor signaling pathway  positive regulation of interleukin-2 secretion  positive regulation of interferon-gamma secretion  
Ontology : EGO-EBIimmunological synapse  cytoplasm  cell-cell junction  F-actin capping protein complex  membrane  cell migration  maintenance of cell polarity  positive regulation of T cell proliferation  establishment of protein localization  positive regulation of regulatory T cell differentiation  thymus development  homeostasis of number of cells  T cell receptor signaling pathway  positive regulation of interleukin-2 secretion  positive regulation of interferon-gamma secretion  
NDEx NetworkRLTPR
Atlas of Cancer Signalling NetworkRLTPR
Wikipedia pathwaysRLTPR
Orthology - Evolution
OrthoDB146206
GeneTree (enSembl)ENSG00000159753
Phylogenetic Trees/Animal Genes : TreeFamRLTPR
HOVERGENQ6F5E8
HOGENOMQ6F5E8
Homologs : HomoloGeneRLTPR
Homology/Alignments : Family Browser (UCSC)RLTPR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRLTPR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RLTPR
dbVarRLTPR
ClinVarRLTPR
1000_GenomesRLTPR 
Exome Variant ServerRLTPR
ExAC (Exome Aggregation Consortium)RLTPR (select the gene name)
Genetic variants : HAPMAP146206
Genomic Variants (DGV)RLTPR [DGVbeta]
DECIPHER (Syndromes)16:67679030-67691472  ENSG00000159753
CONAN: Copy Number AnalysisRLTPR 
Mutations
ICGC Data PortalRLTPR 
TCGA Data PortalRLTPR 
Broad Tumor PortalRLTPR
OASIS PortalRLTPR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRLTPR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRLTPR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RLTPR
DgiDB (Drug Gene Interaction Database)RLTPR
DoCM (Curated mutations)RLTPR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RLTPR (select a term)
intoGenRLTPR
Cancer3DRLTPR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610859   
Orphanet
MedgenRLTPR
Genetic Testing Registry RLTPR
NextProtQ6F5E8 [Medical]
TSGene146206
GENETestsRLTPR
Huge Navigator RLTPR [HugePedia]
snp3D : Map Gene to Disease146206
BioCentury BCIQRLTPR
ClinGenRLTPR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146206
Chemical/Pharm GKB GenePA162401371
Clinical trialRLTPR
Miscellaneous
canSAR (ICR)RLTPR (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRLTPR
EVEXRLTPR
GoPubMedRLTPR
iHOPRLTPR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:09 CET 2017

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