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RMDN1 (regulator of microtubule dynamics 1)

Identity

Alias_namesFAM82B
family with sequence similarity 82, member B
Alias_symbol (synonym)CGI-90
FLJ20665
RMD1
Other aliasRMD-1
HGNC (Hugo) RMDN1
LocusID (NCBI) 51115
Atlas_Id 72657
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 86472349 and ends at 86508780 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RMDN1 (8q21.3) / AKAP6 (14q12)RMDN1 (8q21.3) / ESRP1 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RMDN1   24285
Cards
Entrez_Gene (NCBI)RMDN1  51115  regulator of microtubule dynamics 1
AliasesCGI-90; FAM82B; RMD-1; RMD1
GeneCards (Weizmann)RMDN1
Ensembl hg19 (Hinxton)ENSG00000176623 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176623 [Gene_View]  chr8:86472349-86508780 [Contig_View]  RMDN1 [Vega]
ICGC DataPortalENSG00000176623
TCGA cBioPortalRMDN1
AceView (NCBI)RMDN1
Genatlas (Paris)RMDN1
WikiGenes51115
SOURCE (Princeton)RMDN1
Genetics Home Reference (NIH)RMDN1
Genomic and cartography
GoldenPath hg38 (UCSC)RMDN1  -     chr8:86472349-86508780 -  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RMDN1  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblRMDN1 - 8q21.3 [CytoView hg19]  RMDN1 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBIRMDN1 [Mapview hg19]  RMDN1 [Mapview hg38]
OMIM611871   
Gene and transcription
Genbank (Entrez)AF151848 AK000672 AK297896 AK303122 AL561197
RefSeq transcript (Entrez)NM_001286707 NM_001286719 NM_001317807 NM_016033
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RMDN1
Cluster EST : UnigeneHs.145386 [ NCBI ]
CGAP (NCI)Hs.145386
Alternative Splicing GalleryENSG00000176623
Gene ExpressionRMDN1 [ NCBI-GEO ]   RMDN1 [ EBI - ARRAY_EXPRESS ]   RMDN1 [ SEEK ]   RMDN1 [ MEM ]
Gene Expression Viewer (FireBrowse)RMDN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51115
GTEX Portal (Tissue expression)RMDN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DB5
Splice isoforms : SwissVarQ96DB5
PhosPhoSitePlusQ96DB5
Domains : Interpro (EBI)TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RMDN1
DMDM Disease mutations51115
Blocks (Seattle)RMDN1
SuperfamilyQ96DB5
Human Protein AtlasENSG00000176623
Peptide AtlasQ96DB5
HPRD13042
IPIIPI00329696   IPI00952882   IPI00981381   IPI00981142   IPI00977210   IPI00980177   IPI00423441   IPI00978361   IPI01011506   IPI00980778   IPI00973895   IPI01009427   IPI01011939   IPI00982506   IPI00977135   
Protein Interaction databases
DIP (DOE-UCLA)Q96DB5
IntAct (EBI)Q96DB5
FunCoupENSG00000176623
BioGRIDRMDN1
STRING (EMBL)RMDN1
ZODIACRMDN1
Ontologies - Pathways
QuickGOQ96DB5
Ontology : AmiGOspindle pole  mitochondrion  centrosome  microtubule  
Ontology : EGO-EBIspindle pole  mitochondrion  centrosome  microtubule  
NDEx NetworkRMDN1
Atlas of Cancer Signalling NetworkRMDN1
Wikipedia pathwaysRMDN1
Orthology - Evolution
OrthoDB51115
GeneTree (enSembl)ENSG00000176623
Phylogenetic Trees/Animal Genes : TreeFamRMDN1
HOVERGENQ96DB5
HOGENOMQ96DB5
Homologs : HomoloGeneRMDN1
Homology/Alignments : Family Browser (UCSC)RMDN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRMDN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RMDN1
dbVarRMDN1
ClinVarRMDN1
1000_GenomesRMDN1 
Exome Variant ServerRMDN1
ExAC (Exome Aggregation Consortium)RMDN1 (select the gene name)
Genetic variants : HAPMAP51115
Genomic Variants (DGV)RMDN1 [DGVbeta]
DECIPHERRMDN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRMDN1 
Mutations
ICGC Data PortalRMDN1 
TCGA Data PortalRMDN1 
Broad Tumor PortalRMDN1
OASIS PortalRMDN1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRMDN1
BioMutasearch RMDN1
DgiDB (Drug Gene Interaction Database)RMDN1
DoCM (Curated mutations)RMDN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RMDN1 (select a term)
intoGenRMDN1
Cancer3DRMDN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611871   
Orphanet
MedgenRMDN1
Genetic Testing Registry RMDN1
NextProtQ96DB5 [Medical]
TSGene51115
GENETestsRMDN1
Target ValidationRMDN1
Huge Navigator RMDN1 [HugePedia]
snp3D : Map Gene to Disease51115
BioCentury BCIQRMDN1
ClinGenRMDN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51115
Chemical/Pharm GKB GenePA142671849
Clinical trialRMDN1
Miscellaneous
canSAR (ICR)RMDN1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRMDN1
EVEXRMDN1
GoPubMedRMDN1
iHOPRMDN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:14 CEST 2017

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