Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RMDN2 (regulator of microtubule dynamics 2)

Identity

Alias_namesFAM82A
FAM82A1
family with sequence similarity 82, member A1
Alias_symbol (synonym)FLJ32954
RMD2
Other aliasBLOCK18
PRO34163
PYST9371
RMD-2
RMD4
HGNC (Hugo) RMDN2
LocusID (NCBI) 151393
Atlas_Id 72658
Location 2p22.2  [Link to chromosome band 2p22]
Location_base_pair Starts at 38152462 and ends at 38244890 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF2AK2 (2p22.2) / RMDN2 (2p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RMDN2   26567
Cards
Entrez_Gene (NCBI)RMDN2  151393  regulator of microtubule dynamics 2
AliasesBLOCK18; FAM82A; FAM82A1; PRO34163; 
PYST9371; RMD-2; RMD2; RMD4
GeneCards (Weizmann)RMDN2
Ensembl hg19 (Hinxton)ENSG00000115841 [Gene_View]  chr2:38152462-38244890 [Contig_View]  RMDN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115841 [Gene_View]  chr2:38152462-38244890 [Contig_View]  RMDN2 [Vega]
ICGC DataPortalENSG00000115841
TCGA cBioPortalRMDN2
AceView (NCBI)RMDN2
Genatlas (Paris)RMDN2
WikiGenes151393
SOURCE (Princeton)RMDN2
Genetics Home Reference (NIH)RMDN2
Genomic and cartography
GoldenPath hg19 (UCSC)RMDN2  -     chr2:38152462-38244890 +  2p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RMDN2  -     2p22.2   [Description]    (hg38-Dec_2013)
EnsemblRMDN2 - 2p22.2 [CytoView hg19]  RMDN2 - 2p22.2 [CytoView hg38]
Mapping of homologs : NCBIRMDN2 [Mapview hg19]  RMDN2 [Mapview hg38]
OMIM611872   
Gene and transcription
Genbank (Entrez)AF435956 AK057516 AK095462 AY358269 BC024243
RefSeq transcript (Entrez)NM_001170791 NM_001170792 NM_001170793 NM_144713
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)RMDN2
Cluster EST : UnigeneHs.591566 [ NCBI ]
CGAP (NCI)Hs.591566
Alternative Splicing GalleryENSG00000115841
Gene ExpressionRMDN2 [ NCBI-GEO ]   RMDN2 [ EBI - ARRAY_EXPRESS ]   RMDN2 [ SEEK ]   RMDN2 [ MEM ]
Gene Expression Viewer (FireBrowse)RMDN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151393
GTEX Portal (Tissue expression)RMDN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LZ7
Splice isoforms : SwissVarQ96LZ7
PhosPhoSitePlusQ96LZ7
Domains : Interpro (EBI)TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RMDN2
DMDM Disease mutations151393
Blocks (Seattle)RMDN2
SuperfamilyQ96LZ7
Human Protein AtlasENSG00000115841
Peptide AtlasQ96LZ7
HPRD08741
IPIIPI00432655   IPI00065438   IPI00845261   IPI00916110   IPI00915438   IPI00892528   IPI00892869   IPI00916256   IPI00916791   
Protein Interaction databases
DIP (DOE-UCLA)Q96LZ7
IntAct (EBI)Q96LZ7
FunCoupENSG00000115841
BioGRIDRMDN2
STRING (EMBL)RMDN2
ZODIACRMDN2
Ontologies - Pathways
QuickGOQ96LZ7
Ontology : AmiGOspindle pole  protein binding  cytoplasm  mitochondrion  microtubule  integral component of membrane  
Ontology : EGO-EBIspindle pole  protein binding  cytoplasm  mitochondrion  microtubule  integral component of membrane  
NDEx NetworkRMDN2
Atlas of Cancer Signalling NetworkRMDN2
Wikipedia pathwaysRMDN2
Orthology - Evolution
OrthoDB151393
GeneTree (enSembl)ENSG00000115841
Phylogenetic Trees/Animal Genes : TreeFamRMDN2
HOVERGENQ96LZ7
HOGENOMQ96LZ7
Homologs : HomoloGeneRMDN2
Homology/Alignments : Family Browser (UCSC)RMDN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRMDN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RMDN2
dbVarRMDN2
ClinVarRMDN2
1000_GenomesRMDN2 
Exome Variant ServerRMDN2
ExAC (Exome Aggregation Consortium)RMDN2 (select the gene name)
Genetic variants : HAPMAP151393
Genomic Variants (DGV)RMDN2 [DGVbeta]
DECIPHER (Syndromes)2:38152462-38244890  ENSG00000115841
CONAN: Copy Number AnalysisRMDN2 
Mutations
ICGC Data PortalRMDN2 
TCGA Data PortalRMDN2 
Broad Tumor PortalRMDN2
OASIS PortalRMDN2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRMDN2
BioMutasearch RMDN2
DgiDB (Drug Gene Interaction Database)RMDN2
DoCM (Curated mutations)RMDN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RMDN2 (select a term)
intoGenRMDN2
Cancer3DRMDN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611872   
Orphanet
MedgenRMDN2
Genetic Testing Registry RMDN2
NextProtQ96LZ7 [Medical]
TSGene151393
GENETestsRMDN2
Huge Navigator RMDN2 [HugePedia]
snp3D : Map Gene to Disease151393
BioCentury BCIQRMDN2
ClinGenRMDN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151393
Chemical/Pharm GKB GenePA162387925
Clinical trialRMDN2
Miscellaneous
canSAR (ICR)RMDN2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRMDN2
EVEXRMDN2
GoPubMedRMDN2
iHOPRMDN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:09 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.