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RMDN3 (regulator of microtubule dynamics 3)

Identity

Alias_namesFAM82C
FAM82A2
family with sequence similarity 82
Alias_symbol (synonym)FLJ10579
PTPIP51
RMD3
Other aliasRMD-3
ptpip51
HGNC (Hugo) RMDN3
LocusID (NCBI) 55177
Atlas_Id 40586
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40735884 and ends at 40755336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RMDN3 (15q15.1) / RAD51 (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RMDN3   25550
Cards
Entrez_Gene (NCBI)RMDN3  55177  regulator of microtubule dynamics 3
AliasesFAM82A2; FAM82C; RMD-3; RMD3; 
ptpip51
GeneCards (Weizmann)RMDN3
Ensembl hg19 (Hinxton)ENSG00000137824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137824 [Gene_View]  chr15:40735884-40755336 [Contig_View]  RMDN3 [Vega]
ICGC DataPortalENSG00000137824
TCGA cBioPortalRMDN3
AceView (NCBI)RMDN3
Genatlas (Paris)RMDN3
WikiGenes55177
SOURCE (Princeton)RMDN3
Genetics Home Reference (NIH)RMDN3
Genomic and cartography
GoldenPath hg38 (UCSC)RMDN3  -     chr15:40735884-40755336 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RMDN3  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblRMDN3 - 15q15.1 [CytoView hg19]  RMDN3 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIRMDN3 [Mapview hg19]  RMDN3 [Mapview hg38]
OMIM611873   
Gene and transcription
Genbank (Entrez)AA772280 AB000782 AK001441 AK025963 AK090731
RefSeq transcript (Entrez)NM_001304802 NM_001323894 NM_001323895 NM_001323896 NM_001323897 NM_018145
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RMDN3
Cluster EST : UnigeneHs.632944 [ NCBI ]
CGAP (NCI)Hs.632944
Alternative Splicing GalleryENSG00000137824
Gene ExpressionRMDN3 [ NCBI-GEO ]   RMDN3 [ EBI - ARRAY_EXPRESS ]   RMDN3 [ SEEK ]   RMDN3 [ MEM ]
Gene Expression Viewer (FireBrowse)RMDN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55177
GTEX Portal (Tissue expression)RMDN3
Human Protein AtlasENSG00000137824-RMDN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96TC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96TC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96TC7
Splice isoforms : SwissVarQ96TC7
PhosPhoSitePlusQ96TC7
Domains : Interpro (EBI)TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RMDN3
DMDM Disease mutations55177
Blocks (Seattle)RMDN3
SuperfamilyQ96TC7
Human Protein Atlas [tissue]ENSG00000137824-RMDN3 [tissue]
Peptide AtlasQ96TC7
HPRD07687
IPIIPI00410079   IPI00446735   IPI00845345   
Protein Interaction databases
DIP (DOE-UCLA)Q96TC7
IntAct (EBI)Q96TC7
FunCoupENSG00000137824
BioGRIDRMDN3
STRING (EMBL)RMDN3
ZODIACRMDN3
Ontologies - Pathways
QuickGOQ96TC7
Ontology : AmiGOspindle pole  protein binding  nucleus  mitochondrion  mitochondrial outer membrane  microtubule  cellular calcium ion homeostasis  apoptotic process  integral component of membrane  cell differentiation  
Ontology : EGO-EBIspindle pole  protein binding  nucleus  mitochondrion  mitochondrial outer membrane  microtubule  cellular calcium ion homeostasis  apoptotic process  integral component of membrane  cell differentiation  
NDEx NetworkRMDN3
Atlas of Cancer Signalling NetworkRMDN3
Wikipedia pathwaysRMDN3
Orthology - Evolution
OrthoDB55177
GeneTree (enSembl)ENSG00000137824
Phylogenetic Trees/Animal Genes : TreeFamRMDN3
HOVERGENQ96TC7
HOGENOMQ96TC7
Homologs : HomoloGeneRMDN3
Homology/Alignments : Family Browser (UCSC)RMDN3
Gene fusions - Rearrangements
Tumor Fusion PortalRMDN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRMDN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RMDN3
dbVarRMDN3
ClinVarRMDN3
1000_GenomesRMDN3 
Exome Variant ServerRMDN3
ExAC (Exome Aggregation Consortium)ENSG00000137824
GNOMAD BrowserENSG00000137824
Genetic variants : HAPMAP55177
Genomic Variants (DGV)RMDN3 [DGVbeta]
DECIPHERRMDN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRMDN3 
Mutations
ICGC Data PortalRMDN3 
TCGA Data PortalRMDN3 
Broad Tumor PortalRMDN3
OASIS PortalRMDN3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRMDN3
BioMutasearch RMDN3
DgiDB (Drug Gene Interaction Database)RMDN3
DoCM (Curated mutations)RMDN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RMDN3 (select a term)
intoGenRMDN3
Cancer3DRMDN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611873   
Orphanet
DisGeNETRMDN3
MedgenRMDN3
Genetic Testing Registry RMDN3
NextProtQ96TC7 [Medical]
TSGene55177
GENETestsRMDN3
Target ValidationRMDN3
Huge Navigator RMDN3 [HugePedia]
snp3D : Map Gene to Disease55177
BioCentury BCIQRMDN3
ClinGenRMDN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55177
Chemical/Pharm GKB GenePA162387926
Clinical trialRMDN3
Miscellaneous
canSAR (ICR)RMDN3 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRMDN3
EVEXRMDN3
GoPubMedRMDN3
iHOPRMDN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:56:26 CET 2017

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