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RMND5A (required for meiotic nuclear division 5 homolog A)

Identity

Alias_namesrequired for meiotic nuclear division 5 homolog A (S. cerevisiae)
Alias_symbol (synonym)FLJ13910
RMD5
GID2
GID2A
p44CTLH
Other aliasCTLH
HGNC (Hugo) RMND5A
LocusID (NCBI) 64795
Atlas_Id 72661
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 86720291 and ends at 86778041 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C9orf9 (9q34.13) / RMND5A (2p11.2)DUSP11 (2p13.1) / RMND5A (2p11.2)IFT172 (2p23.3) / RMND5A (2p11.2)
LOC100507412 (-) / RMND5A (2p11.2)POMGNT2 (3p22.1) / RMND5A (2p11.2)RMND5A (2p11.2) / DDAH1 (1p22.3)
RMND5A (2p11.2) / MALAT1 (11q13.1)RMND5A (2p11.2) / TRA2B (3q27.2)WDR74 (11q12.3) / RMND5A (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RMND5A   25850
Cards
Entrez_Gene (NCBI)RMND5A  64795  required for meiotic nuclear division 5 homolog A
AliasesCTLH; GID2; GID2A; RMD5; 
p44CTLH
GeneCards (Weizmann)RMND5A
Ensembl hg19 (Hinxton)ENSG00000153561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153561 [Gene_View]  chr2:86720291-86778041 [Contig_View]  RMND5A [Vega]
ICGC DataPortalENSG00000153561
TCGA cBioPortalRMND5A
AceView (NCBI)RMND5A
Genatlas (Paris)RMND5A
WikiGenes64795
SOURCE (Princeton)RMND5A
Genetics Home Reference (NIH)RMND5A
Genomic and cartography
GoldenPath hg38 (UCSC)RMND5A  -     chr2:86720291-86778041 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RMND5A  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblRMND5A - 2p11.2 [CytoView hg19]  RMND5A - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIRMND5A [Mapview hg19]  RMND5A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022815 AK025448 AK303113 AL050139 AL832022
RefSeq transcript (Entrez)NM_022780
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RMND5A
Cluster EST : UnigeneHs.75277 [ NCBI ]
CGAP (NCI)Hs.75277
Alternative Splicing GalleryENSG00000153561
Gene ExpressionRMND5A [ NCBI-GEO ]   RMND5A [ EBI - ARRAY_EXPRESS ]   RMND5A [ SEEK ]   RMND5A [ MEM ]
Gene Expression Viewer (FireBrowse)RMND5A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64795
GTEX Portal (Tissue expression)RMND5A
Human Protein AtlasENSG00000153561-RMND5A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H871   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H871  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H871
Splice isoforms : SwissVarQ9H871
PhosPhoSitePlusQ9H871
Domaine pattern : Prosite (Expaxy)CTLH (PS50897)    LISH (PS50896)   
Domains : Interpro (EBI)CRA_dom    CTLH/CRA    CTLH_C    LisH    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)CLTH (PF10607)   
Domain families : Pfam (NCBI)pfam10607   
Domain families : Smart (EMBL)CRA (SM00757)  CTLH (SM00668)  LisH (SM00667)  
Conserved Domain (NCBI)RMND5A
DMDM Disease mutations64795
Blocks (Seattle)RMND5A
SuperfamilyQ9H871
Human Protein Atlas [tissue]ENSG00000153561-RMND5A [tissue]
Peptide AtlasQ9H871
HPRD07841
IPIIPI00009707   IPI00554550   
Protein Interaction databases
DIP (DOE-UCLA)Q9H871
IntAct (EBI)Q9H871
FunCoupENSG00000153561
BioGRIDRMND5A
STRING (EMBL)RMND5A
ZODIACRMND5A
Ontologies - Pathways
QuickGOQ9H871
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  nucleus  cytoplasm  GID complex  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  nucleus  cytoplasm  GID complex  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkRMND5A
Atlas of Cancer Signalling NetworkRMND5A
Wikipedia pathwaysRMND5A
Orthology - Evolution
OrthoDB64795
GeneTree (enSembl)ENSG00000153561
Phylogenetic Trees/Animal Genes : TreeFamRMND5A
HOVERGENQ9H871
HOGENOMQ9H871
Homologs : HomoloGeneRMND5A
Homology/Alignments : Family Browser (UCSC)RMND5A
Gene fusions - Rearrangements
Tumor Fusion PortalRMND5A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRMND5A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RMND5A
dbVarRMND5A
ClinVarRMND5A
1000_GenomesRMND5A 
Exome Variant ServerRMND5A
ExAC (Exome Aggregation Consortium)ENSG00000153561
GNOMAD BrowserENSG00000153561
Genetic variants : HAPMAP64795
Genomic Variants (DGV)RMND5A [DGVbeta]
DECIPHERRMND5A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRMND5A 
Mutations
ICGC Data PortalRMND5A 
TCGA Data PortalRMND5A 
Broad Tumor PortalRMND5A
OASIS PortalRMND5A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRMND5A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRMND5A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RMND5A
DgiDB (Drug Gene Interaction Database)RMND5A
DoCM (Curated mutations)RMND5A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RMND5A (select a term)
intoGenRMND5A
Cancer3DRMND5A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRMND5A
MedgenRMND5A
Genetic Testing Registry RMND5A
NextProtQ9H871 [Medical]
TSGene64795
GENETestsRMND5A
Target ValidationRMND5A
Huge Navigator RMND5A [HugePedia]
snp3D : Map Gene to Disease64795
BioCentury BCIQRMND5A
ClinGenRMND5A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64795
Chemical/Pharm GKB GenePA144596388
Clinical trialRMND5A
Miscellaneous
canSAR (ICR)RMND5A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRMND5A
EVEXRMND5A
GoPubMedRMND5A
iHOPRMND5A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:09:47 CET 2017

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