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RMND5B (required for meiotic nuclear division 5 homolog B)

Identity

Alias_namesrequired for meiotic nuclear division 5 homolog B (S. cerevisiae)
Alias_symbol (synonym)FLJ22318
GID2
GID2B
Other alias
HGNC (Hugo) RMND5B
LocusID (NCBI) 64777
Atlas_Id 72662
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 178130961 and ends at 178148570 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HSPA9 (5q31.2) / RMND5B (5q35.3)RMND5B (5q35.3) / RMND5B (5q35.3)SNX12 (Xq13.1) / RMND5B (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RMND5B   26181
Cards
Entrez_Gene (NCBI)RMND5B  64777  required for meiotic nuclear division 5 homolog B
AliasesGID2; GID2B
GeneCards (Weizmann)RMND5B
Ensembl hg19 (Hinxton)ENSG00000145916 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145916 [Gene_View]  chr5:178130961-178148570 [Contig_View]  RMND5B [Vega]
ICGC DataPortalENSG00000145916
TCGA cBioPortalRMND5B
AceView (NCBI)RMND5B
Genatlas (Paris)RMND5B
WikiGenes64777
SOURCE (Princeton)RMND5B
Genetics Home Reference (NIH)RMND5B
Genomic and cartography
GoldenPath hg38 (UCSC)RMND5B  -     chr5:178130961-178148570 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RMND5B  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblRMND5B - 5q35.3 [CytoView hg19]  RMND5B - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIRMND5B [Mapview hg19]  RMND5B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025971 AK093481 AK093622 AK094065 AK122692
RefSeq transcript (Entrez)NM_001288794 NM_001288795 NM_022762
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RMND5B
Cluster EST : UnigeneHs.27222 [ NCBI ]
CGAP (NCI)Hs.27222
Alternative Splicing GalleryENSG00000145916
Gene ExpressionRMND5B [ NCBI-GEO ]   RMND5B [ EBI - ARRAY_EXPRESS ]   RMND5B [ SEEK ]   RMND5B [ MEM ]
Gene Expression Viewer (FireBrowse)RMND5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64777
GTEX Portal (Tissue expression)RMND5B
Human Protein AtlasENSG00000145916-RMND5B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96G75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96G75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96G75
Splice isoforms : SwissVarQ96G75
PhosPhoSitePlusQ96G75
Domaine pattern : Prosite (Expaxy)CTLH (PS50897)    LISH (PS50896)   
Domains : Interpro (EBI)CRA_dom    CTLH/CRA    CTLH_C    LisH    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)CLTH (PF10607)   
Domain families : Pfam (NCBI)pfam10607   
Domain families : Smart (EMBL)CRA (SM00757)  CTLH (SM00668)  LisH (SM00667)  
Conserved Domain (NCBI)RMND5B
DMDM Disease mutations64777
Blocks (Seattle)RMND5B
SuperfamilyQ96G75
Human Protein Atlas [tissue]ENSG00000145916-RMND5B [tissue]
Peptide AtlasQ96G75
HPRD07985
IPIIPI00554796   IPI00153030   IPI00183821   IPI00964332   IPI00964935   IPI00968025   IPI00967944   
Protein Interaction databases
DIP (DOE-UCLA)Q96G75
IntAct (EBI)Q96G75
FunCoupENSG00000145916
BioGRIDRMND5B
STRING (EMBL)RMND5B
ZODIACRMND5B
Ontologies - Pathways
QuickGOQ96G75
Ontology : AmiGOubiquitin-protein transferase activity  nucleus  cytoplasm  GID complex  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIubiquitin-protein transferase activity  nucleus  cytoplasm  GID complex  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkRMND5B
Atlas of Cancer Signalling NetworkRMND5B
Wikipedia pathwaysRMND5B
Orthology - Evolution
OrthoDB64777
GeneTree (enSembl)ENSG00000145916
Phylogenetic Trees/Animal Genes : TreeFamRMND5B
HOVERGENQ96G75
HOGENOMQ96G75
Homologs : HomoloGeneRMND5B
Homology/Alignments : Family Browser (UCSC)RMND5B
Gene fusions - Rearrangements
Tumor Fusion PortalRMND5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRMND5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RMND5B
dbVarRMND5B
ClinVarRMND5B
1000_GenomesRMND5B 
Exome Variant ServerRMND5B
ExAC (Exome Aggregation Consortium)ENSG00000145916
GNOMAD BrowserENSG00000145916
Genetic variants : HAPMAP64777
Genomic Variants (DGV)RMND5B [DGVbeta]
DECIPHERRMND5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRMND5B 
Mutations
ICGC Data PortalRMND5B 
TCGA Data PortalRMND5B 
Broad Tumor PortalRMND5B
OASIS PortalRMND5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRMND5B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRMND5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RMND5B
DgiDB (Drug Gene Interaction Database)RMND5B
DoCM (Curated mutations)RMND5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RMND5B (select a term)
intoGenRMND5B
Cancer3DRMND5B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRMND5B
MedgenRMND5B
Genetic Testing Registry RMND5B
NextProtQ96G75 [Medical]
TSGene64777
GENETestsRMND5B
Target ValidationRMND5B
Huge Navigator RMND5B [HugePedia]
snp3D : Map Gene to Disease64777
BioCentury BCIQRMND5B
ClinGenRMND5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64777
Chemical/Pharm GKB GenePA144596389
Clinical trialRMND5B
Miscellaneous
canSAR (ICR)RMND5B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRMND5B
EVEXRMND5B
GoPubMedRMND5B
iHOPRMND5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:09:47 CET 2017

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