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RN5S1@ (RNA, 5S ribosomal 1q42 cluster)

Identity

Alias_namesRN5S
RNA, 5S cluster 1
Other alias
HGNC (Hugo) RN5S1@
LocusID (NCBI) 6025
Atlas_Id 78830
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228646038 and ends at 228646158 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RN5S1@   10034
Cards
Entrez_Gene (NCBI)RN5S1@  6025  RNA, 5S ribosomal 1q42 cluster
AliasesRN5S
GeneCards (Weizmann)RN5S1@
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:228646038-228646158 [Contig_View]  RN5S1@ [Vega]
TCGA cBioPortalRN5S1@
AceView (NCBI)RN5S1@
Genatlas (Paris)RN5S1@
WikiGenes6025
SOURCE (Princeton)RN5S1@
Genetics Home Reference (NIH)RN5S1@
Genomic and cartography
GoldenPath hg38 (UCSC)RN5S1@  -     chr1:228646038-228646158 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RN5S1@  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRN5S1@ - 1q42.13 [CytoView hg19]  RN5S1@ - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRN5S1@ [Mapview hg19]  RN5S1@ [Mapview hg38]
OMIM180420   
Gene and transcription
Genbank (Entrez)V00589
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RN5S1@
Gene ExpressionRN5S1@ [ NCBI-GEO ]   RN5S1@ [ EBI - ARRAY_EXPRESS ]   RN5S1@ [ SEEK ]   RN5S1@ [ MEM ]
Gene Expression Viewer (FireBrowse)RN5S1@ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6025
GTEX Portal (Tissue expression)RN5S1@
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RN5S1@
DMDM Disease mutations6025
Blocks (Seattle)RN5S1@
Protein Interaction databases
BioGRIDRN5S1@
STRING (EMBL)RN5S1@
ZODIACRN5S1@
Ontologies - Pathways
Huge Navigator RN5S1@ [HugePedia]
snp3D : Map Gene to Disease6025
BioCentury BCIQRN5S1@
ClinGenRN5S1@
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6025
Chemical/Pharm GKB GenePA35529
Clinical trialRN5S1@
Miscellaneous
canSAR (ICR)RN5S1@ (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRN5S1@
EVEXRN5S1@
GoPubMedRN5S1@
iHOPRN5S1@
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:33 CET 2017

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