Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNA5-8SN3 (RNA, 5.8S ribosomal N3)

Identity

Other alias-
HGNC (Hugo) RNA5-8SN3
LocusID (NCBI) 109910381
Atlas_Id 80173
Location 21p11.2  [Link to chromosome band 21p11]
Location_base_pair Starts at 8212571 and ends at 8212727 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RNA5-8SN3   53525
Cards
Entrez_Gene (NCBI)RNA5-8SN3  109910381  RNA, 5.8S ribosomal N3
Aliases
GeneCards (Weizmann)RNA5-8SN3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:8212571-8212727 [Contig_View]  RNA5-8SN3 [Vega]
TCGA cBioPortalRNA5-8SN3
AceView (NCBI)RNA5-8SN3
Genatlas (Paris)RNA5-8SN3
WikiGenes109910381
SOURCE (Princeton)RNA5-8SN3
Genetics Home Reference (NIH)RNA5-8SN3
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5-8SN3  -     chr21:8212571-8212727 +  21p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5-8SN3  -     21p11.2   [Description]    (hg19-Feb_2009)
EnsemblRNA5-8SN3 - 21p11.2 [CytoView hg19]  RNA5-8SN3 - 21p11.2 [CytoView hg38]
Mapping of homologs : NCBIRNA5-8SN3 [Mapview hg19]  RNA5-8SN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5-8SN3
Gene ExpressionRNA5-8SN3 [ NCBI-GEO ]   RNA5-8SN3 [ EBI - ARRAY_EXPRESS ]   RNA5-8SN3 [ SEEK ]   RNA5-8SN3 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5-8SN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109910381
GTEX Portal (Tissue expression)RNA5-8SN3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5-8SN3
DMDM Disease mutations109910381
Blocks (Seattle)RNA5-8SN3
Protein Interaction databases
BioGRIDRNA5-8SN3
STRING (EMBL)RNA5-8SN3
ZODIACRNA5-8SN3
Ontologies - Pathways
Huge Navigator RNA5-8SN3 [HugePedia]
snp3D : Map Gene to Disease109910381
BioCentury BCIQRNA5-8SN3
ClinGenRNA5-8SN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109910381
Clinical trialRNA5-8SN3
Miscellaneous
canSAR (ICR)RNA5-8SN3 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5-8SN3
EVEXRNA5-8SN3
GoPubMedRNA5-8SN3
iHOPRNA5-8SN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:15 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.