Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNA5S1 (RNA, 5S ribosomal 1)

Identity

Alias_namesRN5S1
Other alias
HGNC (Hugo) RNA5S1
LocusID (NCBI) 100169751
Atlas_Id 79957
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228610266 and ends at 228610386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNA5S1   34362
Cards
Entrez_Gene (NCBI)RNA5S1  100169751  RNA, 5S ribosomal 1
AliasesRN5S1
GeneCards (Weizmann)RNA5S1
Ensembl hg19 (Hinxton)ENSG00000199352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000199352 [Gene_View]  chr1:228610266-228610386 [Contig_View]  RNA5S1 [Vega]
ICGC DataPortalENSG00000199352
TCGA cBioPortalRNA5S1
AceView (NCBI)RNA5S1
Genatlas (Paris)RNA5S1
WikiGenes100169751
SOURCE (Princeton)RNA5S1
Genetics Home Reference (NIH)RNA5S1
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5S1  -     chr1:228610266-228610386 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5S1  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRNA5S1 - 1q42.13 [CytoView hg19]  RNA5S1 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNA5S1 [Mapview hg19]  RNA5S1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5S1
Alternative Splicing GalleryENSG00000199352
Gene ExpressionRNA5S1 [ NCBI-GEO ]   RNA5S1 [ EBI - ARRAY_EXPRESS ]   RNA5S1 [ SEEK ]   RNA5S1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5S1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100169751
GTEX Portal (Tissue expression)RNA5S1
Human Protein AtlasENSG00000199352-RNA5S1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5S1
DMDM Disease mutations100169751
Blocks (Seattle)RNA5S1
Human Protein Atlas [tissue]ENSG00000199352-RNA5S1 [tissue]
Protein Interaction databases
FunCoupENSG00000199352
BioGRIDRNA5S1
STRING (EMBL)RNA5S1
ZODIACRNA5S1
Ontologies - Pathways
Huge Navigator RNA5S1 [HugePedia]
snp3D : Map Gene to Disease100169751
BioCentury BCIQRNA5S1
ClinGenRNA5S1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169751
Chemical/Pharm GKB GenePA162401401
Clinical trialRNA5S1
Miscellaneous
canSAR (ICR)RNA5S1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5S1
EVEXRNA5S1
GoPubMedRNA5S1
iHOPRNA5S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:33 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.