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RNA5S11 (RNA, 5S ribosomal 11)

Identity

Alias_namesRN5S11
Other alias
HGNC (Hugo) RNA5S11
LocusID (NCBI) 100169762
Atlas_Id 79888
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228610266 and ends at 228610386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNA5S11   34372
Cards
Entrez_Gene (NCBI)RNA5S11  100169762  RNA, 5S ribosomal 11
AliasesRN5S11
GeneCards (Weizmann)RNA5S11
Ensembl hg19 (Hinxton)ENSG00000199334 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000199334 [Gene_View]  chr1:228610266-228610386 [Contig_View]  RNA5S11 [Vega]
ICGC DataPortalENSG00000199334
TCGA cBioPortalRNA5S11
AceView (NCBI)RNA5S11
Genatlas (Paris)RNA5S11
WikiGenes100169762
SOURCE (Princeton)RNA5S11
Genetics Home Reference (NIH)RNA5S11
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5S11  -     chr1:228610266-228610386 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5S11  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRNA5S11 - 1q42.13 [CytoView hg19]  RNA5S11 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNA5S11 [Mapview hg19]  RNA5S11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5S11
Alternative Splicing GalleryENSG00000199334
Gene ExpressionRNA5S11 [ NCBI-GEO ]   RNA5S11 [ EBI - ARRAY_EXPRESS ]   RNA5S11 [ SEEK ]   RNA5S11 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5S11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100169762
GTEX Portal (Tissue expression)RNA5S11
Human Protein AtlasENSG00000199334-RNA5S11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5S11
DMDM Disease mutations100169762
Blocks (Seattle)RNA5S11
Human Protein Atlas [tissue]ENSG00000199334-RNA5S11 [tissue]
Protein Interaction databases
FunCoupENSG00000199334
BioGRIDRNA5S11
STRING (EMBL)RNA5S11
ZODIACRNA5S11
Ontologies - Pathways
Huge Navigator RNA5S11 [HugePedia]
snp3D : Map Gene to Disease100169762
BioCentury BCIQRNA5S11
ClinGenRNA5S11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169762
Chemical/Pharm GKB GenePA162401403
Clinical trialRNA5S11
Miscellaneous
canSAR (ICR)RNA5S11 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5S11
EVEXRNA5S11
GoPubMedRNA5S11
iHOPRNA5S11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:33 CET 2017

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