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RNA5S16 (RNA, 5S ribosomal 16)

Identity

Alias_namesRN5S16
Other alias
HGNC (Hugo) RNA5S16
LocusID (NCBI) 100169767
Atlas_Id 79053
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228610266 and ends at 228610386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNA5S16   34377
Cards
Entrez_Gene (NCBI)RNA5S16  100169767  RNA, 5S ribosomal 16
AliasesRN5S16
GeneCards (Weizmann)RNA5S16
Ensembl hg19 (Hinxton)ENSG00000202257 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000202257 [Gene_View]  chr1:228610266-228610386 [Contig_View]  RNA5S16 [Vega]
ICGC DataPortalENSG00000202257
TCGA cBioPortalRNA5S16
AceView (NCBI)RNA5S16
Genatlas (Paris)RNA5S16
WikiGenes100169767
SOURCE (Princeton)RNA5S16
Genetics Home Reference (NIH)RNA5S16
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5S16  -     chr1:228610266-228610386 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5S16  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRNA5S16 - 1q42.13 [CytoView hg19]  RNA5S16 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNA5S16 [Mapview hg19]  RNA5S16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5S16
Alternative Splicing GalleryENSG00000202257
Gene ExpressionRNA5S16 [ NCBI-GEO ]   RNA5S16 [ EBI - ARRAY_EXPRESS ]   RNA5S16 [ SEEK ]   RNA5S16 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5S16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100169767
GTEX Portal (Tissue expression)RNA5S16
Human Protein AtlasENSG00000202257-RNA5S16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5S16
DMDM Disease mutations100169767
Blocks (Seattle)RNA5S16
Human Protein Atlas [tissue]ENSG00000202257-RNA5S16 [tissue]
Protein Interaction databases
FunCoupENSG00000202257
BioGRIDRNA5S16
STRING (EMBL)RNA5S16
ZODIACRNA5S16
Ontologies - Pathways
Huge Navigator RNA5S16 [HugePedia]
snp3D : Map Gene to Disease100169767
BioCentury BCIQRNA5S16
ClinGenRNA5S16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169767
Chemical/Pharm GKB GenePA162401408
Clinical trialRNA5S16
Miscellaneous
canSAR (ICR)RNA5S16 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5S16
EVEXRNA5S16
GoPubMedRNA5S16
iHOPRNA5S16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:09:55 CET 2017

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