Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNA5S17 (RNA, 5S ribosomal 17)

Identity

Alias_namesRN5S17
Other alias
HGNC (Hugo) RNA5S17
LocusID (NCBI) 100169768
Atlas_Id 79377
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228610266 and ends at 228610386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNA5S17   34378
Cards
Entrez_Gene (NCBI)RNA5S17  100169768  RNA, 5S ribosomal 17
AliasesRN5S17
GeneCards (Weizmann)RNA5S17
Ensembl hg19 (Hinxton)ENSG00000200370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000200370 [Gene_View]  chr1:228610266-228610386 [Contig_View]  RNA5S17 [Vega]
ICGC DataPortalENSG00000200370
TCGA cBioPortalRNA5S17
AceView (NCBI)RNA5S17
Genatlas (Paris)RNA5S17
WikiGenes100169768
SOURCE (Princeton)RNA5S17
Genetics Home Reference (NIH)RNA5S17
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5S17  -     chr1:228610266-228610386 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5S17  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRNA5S17 - 1q42.13 [CytoView hg19]  RNA5S17 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNA5S17 [Mapview hg19]  RNA5S17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5S17
Alternative Splicing GalleryENSG00000200370
Gene ExpressionRNA5S17 [ NCBI-GEO ]   RNA5S17 [ EBI - ARRAY_EXPRESS ]   RNA5S17 [ SEEK ]   RNA5S17 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5S17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100169768
GTEX Portal (Tissue expression)RNA5S17
Human Protein AtlasENSG00000200370-RNA5S17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5S17
DMDM Disease mutations100169768
Blocks (Seattle)RNA5S17
Human Protein Atlas [tissue]ENSG00000200370-RNA5S17 [tissue]
Protein Interaction databases
FunCoupENSG00000200370
BioGRIDRNA5S17
STRING (EMBL)RNA5S17
ZODIACRNA5S17
Ontologies - Pathways
Huge Navigator RNA5S17 [HugePedia]
snp3D : Map Gene to Disease100169768
BioCentury BCIQRNA5S17
ClinGenRNA5S17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169768
Chemical/Pharm GKB GenePA162401409
Clinical trialRNA5S17
Miscellaneous
canSAR (ICR)RNA5S17 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5S17
EVEXRNA5S17
GoPubMedRNA5S17
iHOPRNA5S17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:09:56 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.