Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNA5S2 (RNA, 5S ribosomal 2)

Identity

Alias_namesRN5S2
Other alias
HGNC (Hugo) RNA5S2
LocusID (NCBI) 100169753
Atlas_Id 80155
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228610266 and ends at 228610386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNA5S2   34363
Cards
Entrez_Gene (NCBI)RNA5S2  100169753  RNA, 5S ribosomal 2
AliasesRN5S2
GeneCards (Weizmann)RNA5S2
Ensembl hg19 (Hinxton)ENSG00000201588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000201588 [Gene_View]  chr1:228610266-228610386 [Contig_View]  RNA5S2 [Vega]
ICGC DataPortalENSG00000201588
TCGA cBioPortalRNA5S2
AceView (NCBI)RNA5S2
Genatlas (Paris)RNA5S2
WikiGenes100169753
SOURCE (Princeton)RNA5S2
Genetics Home Reference (NIH)RNA5S2
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5S2  -     chr1:228610266-228610386 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5S2  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRNA5S2 - 1q42.13 [CytoView hg19]  RNA5S2 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNA5S2 [Mapview hg19]  RNA5S2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5S2
Alternative Splicing GalleryENSG00000201588
Gene ExpressionRNA5S2 [ NCBI-GEO ]   RNA5S2 [ EBI - ARRAY_EXPRESS ]   RNA5S2 [ SEEK ]   RNA5S2 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5S2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100169753
GTEX Portal (Tissue expression)RNA5S2
Human Protein AtlasENSG00000201588-RNA5S2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5S2
DMDM Disease mutations100169753
Blocks (Seattle)RNA5S2
Human Protein Atlas [tissue]ENSG00000201588-RNA5S2 [tissue]
Protein Interaction databases
FunCoupENSG00000201588
BioGRIDRNA5S2
STRING (EMBL)RNA5S2
ZODIACRNA5S2
Ontologies - Pathways
Huge Navigator RNA5S2 [HugePedia]
snp3D : Map Gene to Disease100169753
BioCentury BCIQRNA5S2
ClinGenRNA5S2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169753
Chemical/Pharm GKB GenePA162401410
Clinical trialRNA5S2
Miscellaneous
canSAR (ICR)RNA5S2 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5S2
EVEXRNA5S2
GoPubMedRNA5S2
iHOPRNA5S2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:35 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.