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RNA5S4 (RNA, 5S ribosomal 4)

Identity

Alias_namesRN5S4
Other alias
HGNC (Hugo) RNA5S4
LocusID (NCBI) 100169755
Atlas_Id 79496
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228610266 and ends at 228610386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNA5S4   34365
Cards
Entrez_Gene (NCBI)RNA5S4  100169755  RNA, 5S ribosomal 4
AliasesRN5S4
GeneCards (Weizmann)RNA5S4
Ensembl hg19 (Hinxton)ENSG00000200381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000200381 [Gene_View]  chr1:228610266-228610386 [Contig_View]  RNA5S4 [Vega]
ICGC DataPortalENSG00000200381
TCGA cBioPortalRNA5S4
AceView (NCBI)RNA5S4
Genatlas (Paris)RNA5S4
WikiGenes100169755
SOURCE (Princeton)RNA5S4
Genetics Home Reference (NIH)RNA5S4
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5S4  -     chr1:228610266-228610386 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5S4  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRNA5S4 - 1q42.13 [CytoView hg19]  RNA5S4 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNA5S4 [Mapview hg19]  RNA5S4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5S4
Alternative Splicing GalleryENSG00000200381
Gene ExpressionRNA5S4 [ NCBI-GEO ]   RNA5S4 [ EBI - ARRAY_EXPRESS ]   RNA5S4 [ SEEK ]   RNA5S4 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5S4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100169755
GTEX Portal (Tissue expression)RNA5S4
Human Protein AtlasENSG00000200381-RNA5S4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5S4
DMDM Disease mutations100169755
Blocks (Seattle)RNA5S4
Human Protein Atlas [tissue]ENSG00000200381-RNA5S4 [tissue]
Protein Interaction databases
FunCoupENSG00000200381
BioGRIDRNA5S4
STRING (EMBL)RNA5S4
ZODIACRNA5S4
Ontologies - Pathways
Huge Navigator RNA5S4 [HugePedia]
snp3D : Map Gene to Disease100169755
BioCentury BCIQRNA5S4
ClinGenRNA5S4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169755
Chemical/Pharm GKB GenePA162401412
Clinical trialRNA5S4
Miscellaneous
canSAR (ICR)RNA5S4 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5S4
EVEXRNA5S4
GoPubMedRNA5S4
iHOPRNA5S4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:09:56 CET 2017

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