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RNA5S5 (RNA, 5S ribosomal 5)

Identity

Alias_namesRN5S5
Other alias
HGNC (Hugo) RNA5S5
LocusID (NCBI) 100169756
Atlas_Id 79116
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228610266 and ends at 228610386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNA5S5   34366
Cards
Entrez_Gene (NCBI)RNA5S5  100169756  RNA, 5S ribosomal 5
AliasesRN5S5
GeneCards (Weizmann)RNA5S5
Ensembl hg19 (Hinxton)ENSG00000199396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000199396 [Gene_View]  chr1:228610266-228610386 [Contig_View]  RNA5S5 [Vega]
ICGC DataPortalENSG00000199396
TCGA cBioPortalRNA5S5
AceView (NCBI)RNA5S5
Genatlas (Paris)RNA5S5
WikiGenes100169756
SOURCE (Princeton)RNA5S5
Genetics Home Reference (NIH)RNA5S5
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5S5  -     chr1:228610266-228610386 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5S5  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRNA5S5 - 1q42.13 [CytoView hg19]  RNA5S5 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNA5S5 [Mapview hg19]  RNA5S5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5S5
Alternative Splicing GalleryENSG00000199396
Gene ExpressionRNA5S5 [ NCBI-GEO ]   RNA5S5 [ EBI - ARRAY_EXPRESS ]   RNA5S5 [ SEEK ]   RNA5S5 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5S5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100169756
GTEX Portal (Tissue expression)RNA5S5
Human Protein AtlasENSG00000199396-RNA5S5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5S5
DMDM Disease mutations100169756
Blocks (Seattle)RNA5S5
Human Protein Atlas [tissue]ENSG00000199396-RNA5S5 [tissue]
Protein Interaction databases
FunCoupENSG00000199396
BioGRIDRNA5S5
STRING (EMBL)RNA5S5
ZODIACRNA5S5
Ontologies - Pathways
Huge Navigator RNA5S5 [HugePedia]
snp3D : Map Gene to Disease100169756
BioCentury BCIQRNA5S5
ClinGenRNA5S5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169756
Chemical/Pharm GKB GenePA162401413
Clinical trialRNA5S5
Miscellaneous
canSAR (ICR)RNA5S5 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5S5
EVEXRNA5S5
GoPubMedRNA5S5
iHOPRNA5S5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:35 CET 2017

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