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RNA5S6 (RNA, 5S ribosomal 6)

Identity

Alias_namesRN5S6
Other alias
HGNC (Hugo) RNA5S6
LocusID (NCBI) 100169757
Atlas_Id 80147
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228610266 and ends at 228610386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNA5S6   34367
Cards
Entrez_Gene (NCBI)RNA5S6  100169757  RNA, 5S ribosomal 6
AliasesRN5S6
GeneCards (Weizmann)RNA5S6
Ensembl hg19 (Hinxton)ENSG00000200624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000200624 [Gene_View]  chr1:228610266-228610386 [Contig_View]  RNA5S6 [Vega]
ICGC DataPortalENSG00000200624
TCGA cBioPortalRNA5S6
AceView (NCBI)RNA5S6
Genatlas (Paris)RNA5S6
WikiGenes100169757
SOURCE (Princeton)RNA5S6
Genetics Home Reference (NIH)RNA5S6
Genomic and cartography
GoldenPath hg38 (UCSC)RNA5S6  -     chr1:228610266-228610386 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNA5S6  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblRNA5S6 - 1q42.13 [CytoView hg19]  RNA5S6 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNA5S6 [Mapview hg19]  RNA5S6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNA5S6
Alternative Splicing GalleryENSG00000200624
Gene ExpressionRNA5S6 [ NCBI-GEO ]   RNA5S6 [ EBI - ARRAY_EXPRESS ]   RNA5S6 [ SEEK ]   RNA5S6 [ MEM ]
Gene Expression Viewer (FireBrowse)RNA5S6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100169757
GTEX Portal (Tissue expression)RNA5S6
Human Protein AtlasENSG00000200624-RNA5S6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNA5S6
DMDM Disease mutations100169757
Blocks (Seattle)RNA5S6
Human Protein Atlas [tissue]ENSG00000200624-RNA5S6 [tissue]
Protein Interaction databases
FunCoupENSG00000200624
BioGRIDRNA5S6
STRING (EMBL)RNA5S6
ZODIACRNA5S6
Ontologies - Pathways
Huge Navigator RNA5S6 [HugePedia]
snp3D : Map Gene to Disease100169757
BioCentury BCIQRNA5S6
ClinGenRNA5S6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169757
Chemical/Pharm GKB GenePA162401414
Clinical trialRNA5S6
Miscellaneous
canSAR (ICR)RNA5S6 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNA5S6
EVEXRNA5S6
GoPubMedRNA5S6
iHOPRNA5S6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:35 CET 2017

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