Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNASE10 (ribonuclease A family member 10 (inactive))

Identity

Alias_namesribonuclease, RNase A family, 10 (non-active)
Alias_symbol (synonym)RNASE9
RAH1
Other alias
HGNC (Hugo) RNASE10
LocusID (NCBI) 338879
Atlas_Id 72663
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 20510472 and ends at 20511122 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNASE10 (14q11.2) / CD38 (4p15.32)STRN3 (14q12) / RNASE10 (14q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNASE10   19275
Cards
Entrez_Gene (NCBI)RNASE10  338879  ribonuclease A family member 10 (inactive)
AliasesRAH1; RNASE9
GeneCards (Weizmann)RNASE10
Ensembl hg19 (Hinxton)ENSG00000182545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182545 [Gene_View]  chr14:20510472-20511122 [Contig_View]  RNASE10 [Vega]
ICGC DataPortalENSG00000182545
TCGA cBioPortalRNASE10
AceView (NCBI)RNASE10
Genatlas (Paris)RNASE10
WikiGenes338879
SOURCE (Princeton)RNASE10
Genetics Home Reference (NIH)RNASE10
Genomic and cartography
GoldenPath hg38 (UCSC)RNASE10  -     chr14:20510472-20511122 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNASE10  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblRNASE10 - 14q11.2 [CytoView hg19]  RNASE10 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIRNASE10 [Mapview hg19]  RNASE10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK296766 AY665805 BC133002 BC133028
RefSeq transcript (Entrez)NM_001012975
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNASE10
Cluster EST : UnigeneHs.451057 [ NCBI ]
CGAP (NCI)Hs.451057
Alternative Splicing GalleryENSG00000182545
Gene ExpressionRNASE10 [ NCBI-GEO ]   RNASE10 [ EBI - ARRAY_EXPRESS ]   RNASE10 [ SEEK ]   RNASE10 [ MEM ]
Gene Expression Viewer (FireBrowse)RNASE10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338879
GTEX Portal (Tissue expression)RNASE10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5GAN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5GAN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5GAN6
Splice isoforms : SwissVarQ5GAN6
PhosPhoSitePlusQ5GAN6
Domains : Interpro (EBI)RNASE10    RNaseA    RNaseA_domain   
Domain families : Pfam (Sanger)RnaseA (PF00074)   
Domain families : Pfam (NCBI)pfam00074   
Domain families : Smart (EMBL)RNAse_Pc (SM00092)  
Domain structure : Prodom (Prabi Lyon)RNaseA (PD000535)   
Conserved Domain (NCBI)RNASE10
DMDM Disease mutations338879
Blocks (Seattle)RNASE10
SuperfamilyQ5GAN6
Human Protein AtlasENSG00000182545
Peptide AtlasQ5GAN6
HPRD18495
IPIIPI00939897   IPI00244518   
Protein Interaction databases
DIP (DOE-UCLA)Q5GAN6
IntAct (EBI)Q5GAN6
FunCoupENSG00000182545
BioGRIDRNASE10
STRING (EMBL)RNASE10
ZODIACRNASE10
Ontologies - Pathways
QuickGOQ5GAN6
Ontology : AmiGOnucleic acid binding  endonuclease activity  ribonuclease activity  extracellular region  single fertilization  positive regulation of cell-cell adhesion  heterotypic cell-cell adhesion  regulation of fertilization  positive regulation of flagellated sperm motility  
Ontology : EGO-EBInucleic acid binding  endonuclease activity  ribonuclease activity  extracellular region  single fertilization  positive regulation of cell-cell adhesion  heterotypic cell-cell adhesion  regulation of fertilization  positive regulation of flagellated sperm motility  
NDEx NetworkRNASE10
Atlas of Cancer Signalling NetworkRNASE10
Wikipedia pathwaysRNASE10
Orthology - Evolution
OrthoDB338879
GeneTree (enSembl)ENSG00000182545
Phylogenetic Trees/Animal Genes : TreeFamRNASE10
HOVERGENQ5GAN6
HOGENOMQ5GAN6
Homologs : HomoloGeneRNASE10
Homology/Alignments : Family Browser (UCSC)RNASE10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNASE10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNASE10
dbVarRNASE10
ClinVarRNASE10
1000_GenomesRNASE10 
Exome Variant ServerRNASE10
ExAC (Exome Aggregation Consortium)RNASE10 (select the gene name)
Genetic variants : HAPMAP338879
Genomic Variants (DGV)RNASE10 [DGVbeta]
DECIPHERRNASE10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNASE10 
Mutations
ICGC Data PortalRNASE10 
TCGA Data PortalRNASE10 
Broad Tumor PortalRNASE10
OASIS PortalRNASE10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNASE10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNASE10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNASE10
DgiDB (Drug Gene Interaction Database)RNASE10
DoCM (Curated mutations)RNASE10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNASE10 (select a term)
intoGenRNASE10
Cancer3DRNASE10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNASE10
Genetic Testing Registry RNASE10
NextProtQ5GAN6 [Medical]
TSGene338879
GENETestsRNASE10
Target ValidationRNASE10
Huge Navigator RNASE10 [HugePedia]
snp3D : Map Gene to Disease338879
BioCentury BCIQRNASE10
ClinGenRNASE10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338879
Chemical/Pharm GKB GenePA134878150
Clinical trialRNASE10
Miscellaneous
canSAR (ICR)RNASE10 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNASE10
EVEXRNASE10
GoPubMedRNASE10
iHOPRNASE10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:36:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.