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RNASE13 (ribonuclease A family member 13 (inactive))

Identity

Alias_namesribonuclease, RNase A family, 13 (non-active)
Alias_symbol (synonym)RAL1
Other aliasHEL-S-86p
HGNC (Hugo) RNASE13
LocusID (NCBI) 440163
Atlas_Id 72666
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21032820 and ends at 21034785 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNASE13   25285
Cards
Entrez_Gene (NCBI)RNASE13  440163  ribonuclease A family member 13 (inactive)
AliasesHEL-S-86p; RAL1
GeneCards (Weizmann)RNASE13
Ensembl hg19 (Hinxton)ENSG00000206150 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206150 [Gene_View]  chr14:21032820-21034785 [Contig_View]  RNASE13 [Vega]
ICGC DataPortalENSG00000206150
TCGA cBioPortalRNASE13
AceView (NCBI)RNASE13
Genatlas (Paris)RNASE13
WikiGenes440163
SOURCE (Princeton)RNASE13
Genetics Home Reference (NIH)RNASE13
Genomic and cartography
GoldenPath hg38 (UCSC)RNASE13  -     chr14:21032820-21034785 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNASE13  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblRNASE13 - 14q11.2 [CytoView hg19]  RNASE13 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIRNASE13 [Mapview hg19]  RNASE13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY665808 BC044831 FJ237363
RefSeq transcript (Entrez)NM_001012264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNASE13
Cluster EST : UnigeneHs.666729 [ NCBI ]
CGAP (NCI)Hs.666729
Alternative Splicing GalleryENSG00000206150
Gene ExpressionRNASE13 [ NCBI-GEO ]   RNASE13 [ EBI - ARRAY_EXPRESS ]   RNASE13 [ SEEK ]   RNASE13 [ MEM ]
Gene Expression Viewer (FireBrowse)RNASE13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440163
GTEX Portal (Tissue expression)RNASE13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5GAN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5GAN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5GAN3
Splice isoforms : SwissVarQ5GAN3
PhosPhoSitePlusQ5GAN3
Domains : Interpro (EBI)RNASE13    RNaseA    RNaseA_domain   
Domain families : Pfam (Sanger)RnaseA (PF00074)   
Domain families : Pfam (NCBI)pfam00074   
Domain structure : Prodom (Prabi Lyon)RNaseA (PD000535)   
Conserved Domain (NCBI)RNASE13
DMDM Disease mutations440163
Blocks (Seattle)RNASE13
SuperfamilyQ5GAN3
Human Protein AtlasENSG00000206150
Peptide AtlasQ5GAN3
HPRD17980
IPIIPI00456130   
Protein Interaction databases
DIP (DOE-UCLA)Q5GAN3
IntAct (EBI)Q5GAN3
FunCoupENSG00000206150
BioGRIDRNASE13
STRING (EMBL)RNASE13
ZODIACRNASE13
Ontologies - Pathways
QuickGOQ5GAN3
Ontology : AmiGOnucleic acid binding  endonuclease activity  ribonuclease activity  extracellular region  
Ontology : EGO-EBInucleic acid binding  endonuclease activity  ribonuclease activity  extracellular region  
NDEx NetworkRNASE13
Atlas of Cancer Signalling NetworkRNASE13
Wikipedia pathwaysRNASE13
Orthology - Evolution
OrthoDB440163
GeneTree (enSembl)ENSG00000206150
Phylogenetic Trees/Animal Genes : TreeFamRNASE13
HOVERGENQ5GAN3
HOGENOMQ5GAN3
Homologs : HomoloGeneRNASE13
Homology/Alignments : Family Browser (UCSC)RNASE13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNASE13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNASE13
dbVarRNASE13
ClinVarRNASE13
1000_GenomesRNASE13 
Exome Variant ServerRNASE13
ExAC (Exome Aggregation Consortium)RNASE13 (select the gene name)
Genetic variants : HAPMAP440163
Genomic Variants (DGV)RNASE13 [DGVbeta]
DECIPHERRNASE13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNASE13 
Mutations
ICGC Data PortalRNASE13 
TCGA Data PortalRNASE13 
Broad Tumor PortalRNASE13
OASIS PortalRNASE13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNASE13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNASE13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNASE13
DgiDB (Drug Gene Interaction Database)RNASE13
DoCM (Curated mutations)RNASE13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNASE13 (select a term)
intoGenRNASE13
Cancer3DRNASE13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNASE13
Genetic Testing Registry RNASE13
NextProtQ5GAN3 [Medical]
TSGene440163
GENETestsRNASE13
Target ValidationRNASE13
Huge Navigator RNASE13 [HugePedia]
snp3D : Map Gene to Disease440163
BioCentury BCIQRNASE13
ClinGenRNASE13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440163
Chemical/Pharm GKB GenePA134922548
Clinical trialRNASE13
Miscellaneous
canSAR (ICR)RNASE13 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNASE13
EVEXRNASE13
GoPubMedRNASE13
iHOPRNASE13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:47 CEST 2017

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