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RNASE4 (ribonuclease, RNase A family, 4)

Identity

Alias_namesribonuclease, RNase A family, 4
Alias_symbol (synonym)RAB1
Other aliasRNS4
HGNC (Hugo) RNASE4
LocusID (NCBI) 6038
Atlas_Id 72668
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21152372 and ends at 21168761 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNASE4   10047
Cards
Entrez_Gene (NCBI)RNASE4  6038  ribonuclease, RNase A family, 4
AliasesRAB1; RNS4
GeneCards (Weizmann)RNASE4
Ensembl hg19 (Hinxton)ENSG00000258818 [Gene_View]  chr14:21152372-21168761 [Contig_View]  RNASE4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000258818 [Gene_View]  chr14:21152372-21168761 [Contig_View]  RNASE4 [Vega]
ICGC DataPortalENSG00000258818
TCGA cBioPortalRNASE4
AceView (NCBI)RNASE4
Genatlas (Paris)RNASE4
WikiGenes6038
SOURCE (Princeton)RNASE4
Genetics Home Reference (NIH)RNASE4
Genomic and cartography
GoldenPath hg19 (UCSC)RNASE4  -     chr14:21152372-21168761 +  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNASE4  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblRNASE4 - 14q11.2 [CytoView hg19]  RNASE4 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIRNASE4 [Mapview hg19]  RNASE4 [Mapview hg38]
OMIM601030   
Gene and transcription
Genbank (Entrez)AK092422 BC015520 BG616902 BU594423 BX247985
RefSeq transcript (Entrez)NM_001282192 NM_001282193 NM_002937 NM_194430 NM_194431
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_008717 NG_033053 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)RNASE4
Cluster EST : UnigeneHs.283749 [ NCBI ]
CGAP (NCI)Hs.283749
Alternative Splicing GalleryENSG00000258818
Gene ExpressionRNASE4 [ NCBI-GEO ]   RNASE4 [ EBI - ARRAY_EXPRESS ]   RNASE4 [ SEEK ]   RNASE4 [ MEM ]
Gene Expression Viewer (FireBrowse)RNASE4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6038
GTEX Portal (Tissue expression)RNASE4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP34096   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP34096  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP34096
Splice isoforms : SwissVarP34096
Catalytic activity : Enzyme3.1.27.- [ Enzyme-Expasy ]   3.1.27.-3.1.27.- [ IntEnz-EBI ]   3.1.27.- [ BRENDA ]   3.1.27.- [ KEGG ]   
PhosPhoSitePlusP34096
Domaine pattern : Prosite (Expaxy)RNASE_PANCREATIC (PS00127)   
Domains : Interpro (EBI)RNaseA    RNaseA_AS    RNaseA_domain   
Domain families : Pfam (Sanger)RnaseA (PF00074)   
Domain families : Pfam (NCBI)pfam00074   
Domain families : Smart (EMBL)RNAse_Pc (SM00092)  
Domain structure : Prodom (Prabi Lyon)RNaseA (PD000535)   
Conserved Domain (NCBI)RNASE4
DMDM Disease mutations6038
Blocks (Seattle)RNASE4
PDB (SRS)1RNF    2RNF   
PDB (PDBSum)1RNF    2RNF   
PDB (IMB)1RNF    2RNF   
PDB (RSDB)1RNF    2RNF   
Structural Biology KnowledgeBase1RNF    2RNF   
SCOP (Structural Classification of Proteins)1RNF    2RNF   
CATH (Classification of proteins structures)1RNF    2RNF   
SuperfamilyP34096
Human Protein AtlasENSG00000258818
Peptide AtlasP34096
HPRD03018
IPIIPI00029699   
Protein Interaction databases
DIP (DOE-UCLA)P34096
IntAct (EBI)P34096
FunCoupENSG00000258818
BioGRIDRNASE4
STRING (EMBL)RNASE4
ZODIACRNASE4
Ontologies - Pathways
QuickGOP34096
Ontology : AmiGOnucleic acid binding  ribonuclease A activity  extracellular region  mRNA cleavage  cellular response to starvation  extracellular exosome  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBInucleic acid binding  ribonuclease A activity  extracellular region  mRNA cleavage  cellular response to starvation  extracellular exosome  RNA phosphodiester bond hydrolysis, endonucleolytic  
NDEx NetworkRNASE4
Atlas of Cancer Signalling NetworkRNASE4
Wikipedia pathwaysRNASE4
Orthology - Evolution
OrthoDB6038
GeneTree (enSembl)ENSG00000258818
Phylogenetic Trees/Animal Genes : TreeFamRNASE4
HOVERGENP34096
HOGENOMP34096
Homologs : HomoloGeneRNASE4
Homology/Alignments : Family Browser (UCSC)RNASE4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNASE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNASE4
dbVarRNASE4
ClinVarRNASE4
1000_GenomesRNASE4 
Exome Variant ServerRNASE4
ExAC (Exome Aggregation Consortium)RNASE4 (select the gene name)
Genetic variants : HAPMAP6038
Genomic Variants (DGV)RNASE4 [DGVbeta]
DECIPHER (Syndromes)14:21152372-21168761  ENSG00000258818
CONAN: Copy Number AnalysisRNASE4 
Mutations
ICGC Data PortalRNASE4 
TCGA Data PortalRNASE4 
Broad Tumor PortalRNASE4
OASIS PortalRNASE4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNASE4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNASE4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNASE4
DgiDB (Drug Gene Interaction Database)RNASE4
DoCM (Curated mutations)RNASE4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNASE4 (select a term)
intoGenRNASE4
Cancer3DRNASE4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601030   
Orphanet
MedgenRNASE4
Genetic Testing Registry RNASE4
NextProtP34096 [Medical]
TSGene6038
GENETestsRNASE4
Huge Navigator RNASE4 [HugePedia]
snp3D : Map Gene to Disease6038
BioCentury BCIQRNASE4
ClinGenRNASE4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6038
Chemical/Pharm GKB GenePA34415
Clinical trialRNASE4
Miscellaneous
canSAR (ICR)RNASE4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNASE4
EVEXRNASE4
GoPubMedRNASE4
iHOPRNASE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:12 CET 2017

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