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RNASE7 (ribonuclease A family member 7)

Identity

Alias_namesribonuclease, RNase A family, 7
Alias_symbol (synonym)RAE1
Other alias
HGNC (Hugo) RNASE7
LocusID (NCBI) 84659
Atlas_Id 72670
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21042226 and ends at 21044233 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNASE7   19278
Cards
Entrez_Gene (NCBI)RNASE7  84659  ribonuclease A family member 7
AliasesRAE1
GeneCards (Weizmann)RNASE7
Ensembl hg19 (Hinxton)ENSG00000165799 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165799 [Gene_View]  chr14:21042226-21044233 [Contig_View]  RNASE7 [Vega]
ICGC DataPortalENSG00000165799
TCGA cBioPortalRNASE7
AceView (NCBI)RNASE7
Genatlas (Paris)RNASE7
WikiGenes84659
SOURCE (Princeton)RNASE7
Genetics Home Reference (NIH)RNASE7
Genomic and cartography
GoldenPath hg38 (UCSC)RNASE7  -     chr14:21042226-21044233 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNASE7  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblRNASE7 - 14q11.2 [CytoView hg19]  RNASE7 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIRNASE7 [Mapview hg19]  RNASE7 [Mapview hg38]
OMIM612484   
Gene and transcription
Genbank (Entrez)AI150610 AJ131212 AJ306608 AJ306609 AJ306610
RefSeq transcript (Entrez)NM_032572
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNASE7
Cluster EST : UnigeneHs.525206 [ NCBI ]
CGAP (NCI)Hs.525206
Alternative Splicing GalleryENSG00000165799
Gene ExpressionRNASE7 [ NCBI-GEO ]   RNASE7 [ EBI - ARRAY_EXPRESS ]   RNASE7 [ SEEK ]   RNASE7 [ MEM ]
Gene Expression Viewer (FireBrowse)RNASE7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84659
GTEX Portal (Tissue expression)RNASE7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1E1
Splice isoforms : SwissVarQ9H1E1
Catalytic activity : Enzyme3.1.27.- [ Enzyme-Expasy ]   3.1.27.-3.1.27.- [ IntEnz-EBI ]   3.1.27.- [ BRENDA ]   3.1.27.- [ KEGG ]   
PhosPhoSitePlusQ9H1E1
Domaine pattern : Prosite (Expaxy)RNASE_PANCREATIC (PS00127)   
Domains : Interpro (EBI)RNaseA    RNaseA_AS    RNaseA_domain   
Domain families : Pfam (Sanger)RnaseA (PF00074)   
Domain families : Pfam (NCBI)pfam00074   
Domain families : Smart (EMBL)RNAse_Pc (SM00092)  
Domain structure : Prodom (Prabi Lyon)RNaseA (PD000535)   
Conserved Domain (NCBI)RNASE7
DMDM Disease mutations84659
Blocks (Seattle)RNASE7
PDB (SRS)2HKY   
PDB (PDBSum)2HKY   
PDB (IMB)2HKY   
PDB (RSDB)2HKY   
Structural Biology KnowledgeBase2HKY   
SCOP (Structural Classification of Proteins)2HKY   
CATH (Classification of proteins structures)2HKY   
SuperfamilyQ9H1E1
Human Protein AtlasENSG00000165799
Peptide AtlasQ9H1E1
HPRD17981
IPIIPI00000270   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1E1
IntAct (EBI)Q9H1E1
FunCoupENSG00000165799
BioGRIDRNASE7
STRING (EMBL)RNASE7
ZODIACRNASE7
Ontologies - Pathways
QuickGOQ9H1E1
Ontology : AmiGOlipopolysaccharide binding  nucleic acid binding  endonuclease activity  ribonuclease activity  extracellular region  extracellular region  extracellular region  response to bacterium  antimicrobial humoral response  antibacterial humoral response  peptidoglycan binding  innate immune response  innate immune response  defense response to Gram-negative bacterium  defense response to Gram-positive bacterium  membrane disruption in other organism  extracellular exosome  RNA phosphodiester bond hydrolysis  
Ontology : EGO-EBIlipopolysaccharide binding  nucleic acid binding  endonuclease activity  ribonuclease activity  extracellular region  extracellular region  extracellular region  response to bacterium  antimicrobial humoral response  antibacterial humoral response  peptidoglycan binding  innate immune response  innate immune response  defense response to Gram-negative bacterium  defense response to Gram-positive bacterium  membrane disruption in other organism  extracellular exosome  RNA phosphodiester bond hydrolysis  
NDEx NetworkRNASE7
Atlas of Cancer Signalling NetworkRNASE7
Wikipedia pathwaysRNASE7
Orthology - Evolution
OrthoDB84659
GeneTree (enSembl)ENSG00000165799
Phylogenetic Trees/Animal Genes : TreeFamRNASE7
HOVERGENQ9H1E1
HOGENOMQ9H1E1
Homologs : HomoloGeneRNASE7
Homology/Alignments : Family Browser (UCSC)RNASE7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNASE7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNASE7
dbVarRNASE7
ClinVarRNASE7
1000_GenomesRNASE7 
Exome Variant ServerRNASE7
ExAC (Exome Aggregation Consortium)RNASE7 (select the gene name)
Genetic variants : HAPMAP84659
Genomic Variants (DGV)RNASE7 [DGVbeta]
DECIPHERRNASE7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNASE7 
Mutations
ICGC Data PortalRNASE7 
TCGA Data PortalRNASE7 
Broad Tumor PortalRNASE7
OASIS PortalRNASE7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNASE7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNASE7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNASE7
DgiDB (Drug Gene Interaction Database)RNASE7
DoCM (Curated mutations)RNASE7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNASE7 (select a term)
intoGenRNASE7
Cancer3DRNASE7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612484   
Orphanet
MedgenRNASE7
Genetic Testing Registry RNASE7
NextProtQ9H1E1 [Medical]
TSGene84659
GENETestsRNASE7
Target ValidationRNASE7
Huge Navigator RNASE7 [HugePedia]
snp3D : Map Gene to Disease84659
BioCentury BCIQRNASE7
ClinGenRNASE7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84659
Chemical/Pharm GKB GenePA134939592
Clinical trialRNASE7
Miscellaneous
canSAR (ICR)RNASE7 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNASE7
EVEXRNASE7
GoPubMedRNASE7
iHOPRNASE7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:48 CEST 2017

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