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RNASEH2C (ribonuclease H2 subunit C)

Identity

Alias (NCBI)AGS3
AYP1
HGNC (Hugo) RNASEH2C
HGNC Alias symbAYP1
AGS3
HGNC Alias nameAicardi-Goutieres syndrome 3
HGNC Previous nameribonuclease H2, subunit C
LocusID (NCBI) 84153
Atlas_Id 72676
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65717673 and ends at 65720938 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNASEH2C   24116
LRG (Locus Reference Genomic)LRG_280
Cards
Entrez_Gene (NCBI)RNASEH2C    ribonuclease H2 subunit C
AliasesAGS3; AYP1
GeneCards (Weizmann)RNASEH2C
Ensembl hg19 (Hinxton)ENSG00000172922 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172922 [Gene_View]  ENSG00000172922 [Sequence]  chr11:65717673-65720938 [Contig_View]  RNASEH2C [Vega]
ICGC DataPortalENSG00000172922
TCGA cBioPortalRNASEH2C
AceView (NCBI)RNASEH2C
Genatlas (Paris)RNASEH2C
SOURCE (Princeton)RNASEH2C
Genetics Home Reference (NIH)RNASEH2C
Genomic and cartography
GoldenPath hg38 (UCSC)RNASEH2C  -     chr11:65717673-65720938 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNASEH2C  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathRNASEH2C - 11q13.1 [CytoView hg19]  RNASEH2C - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000172922
genome Data Viewer NCBIRNASEH2C [Mapview hg19]  
OMIM610329   610330   
Gene and transcription
Genbank (Entrez)AF312034 AF346606 AK024627 AK225131 AK297660
RefSeq transcript (Entrez)NM_032193
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNASEH2C
Alternative Splicing GalleryENSG00000172922
Gene ExpressionRNASEH2C [ NCBI-GEO ]   RNASEH2C [ EBI - ARRAY_EXPRESS ]   RNASEH2C [ SEEK ]   RNASEH2C [ MEM ]
Gene Expression Viewer (FireBrowse)RNASEH2C [ Firebrowse - Broad ]
GenevisibleExpression of RNASEH2C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84153
GTEX Portal (Tissue expression)RNASEH2C
Human Protein AtlasENSG00000172922-RNASEH2C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDP1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDP1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDP1
Splice isoforms : SwissVarQ8TDP1
PhosPhoSitePlusQ8TDP1
Domains : Interpro (EBI)RNase_H2_suC   
Domain families : Pfam (Sanger)RNase_H2_suC (PF08615)   
Domain families : Pfam (NCBI)pfam08615   
Conserved Domain (NCBI)RNASEH2C
Blocks (Seattle)RNASEH2C
PDB (RSDB)3P56    3PUF   
PDB Europe3P56    3PUF   
PDB (PDBSum)3P56    3PUF   
PDB (IMB)3P56    3PUF   
Structural Biology KnowledgeBase3P56    3PUF   
SCOP (Structural Classification of Proteins)3P56    3PUF   
CATH (Classification of proteins structures)3P56    3PUF   
SuperfamilyQ8TDP1
Human Protein Atlas [tissue]ENSG00000172922-RNASEH2C [tissue]
Peptide AtlasQ8TDP1
HPRD16531
IPIIPI00382985   IPI00784761   IPI00983606   IPI00984609   IPI00983987   IPI01025388   IPI00984287   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDP1
IntAct (EBI)Q8TDP1
BioGRIDRNASEH2C
STRING (EMBL)RNASEH2C
ZODIACRNASEH2C
Ontologies - Pathways
QuickGOQ8TDP1
Ontology : AmiGOnucleus  RNA catabolic process  ribonuclease H2 complex  
Ontology : EGO-EBInucleus  RNA catabolic process  ribonuclease H2 complex  
NDEx NetworkRNASEH2C
Atlas of Cancer Signalling NetworkRNASEH2C
Wikipedia pathwaysRNASEH2C
Orthology - Evolution
OrthoDB84153
GeneTree (enSembl)ENSG00000172922
Phylogenetic Trees/Animal Genes : TreeFamRNASEH2C
HOGENOMQ8TDP1
Homologs : HomoloGeneRNASEH2C
Homology/Alignments : Family Browser (UCSC)RNASEH2C
Gene fusions - Rearrangements
Fusion : QuiverRNASEH2C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNASEH2C [hg38]
dbVarRNASEH2C
ClinVarRNASEH2C
MonarchRNASEH2C
1000_GenomesRNASEH2C 
Exome Variant ServerRNASEH2C
GNOMAD BrowserENSG00000172922
Varsome BrowserRNASEH2C
Genomic Variants (DGV)RNASEH2C [DGVbeta]
DECIPHERRNASEH2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNASEH2C 
Mutations
ICGC Data PortalRNASEH2C 
TCGA Data PortalRNASEH2C 
Broad Tumor PortalRNASEH2C
OASIS PortalRNASEH2C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNASEH2C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNASEH2C
Mutations and Diseases : HGMDRNASEH2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RNASEH2C
DgiDB (Drug Gene Interaction Database)RNASEH2C
DoCM (Curated mutations)RNASEH2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNASEH2C (select a term)
intoGenRNASEH2C
Cancer3DRNASEH2C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610329    610330   
Orphanet1309   
DisGeNETRNASEH2C
MedgenRNASEH2C
Genetic Testing Registry RNASEH2C
NextProtQ8TDP1 [Medical]
GENETestsRNASEH2C
Target ValidationRNASEH2C
Huge Navigator RNASEH2C [HugePedia]
ClinGenRNASEH2C
Clinical trials, drugs, therapy
MyCancerGenomeRNASEH2C
Protein Interactions : CTD
Pharm GKB GenePA162401445
Clinical trialRNASEH2C
Miscellaneous
canSAR (ICR)RNASEH2C (select the gene name)
HarmonizomeRNASEH2C
DataMed IndexRNASEH2C
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNASEH2C
EVEXRNASEH2C
GoPubMedRNASEH2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:24:58 CET 2020
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