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RNASEK (ribonuclease K)

Identity

Alias_namesribonuclease, RNase K
Alias_symbol (synonym)MGC71993
Other alias-
HGNC (Hugo) RNASEK
LocusID (NCBI) 440400
Atlas_Id 72677
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7012417 and ends at 7014533 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALOX12 (17p13.1) / RNASEK (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNASEK   33911
Cards
Entrez_Gene (NCBI)RNASEK  440400  ribonuclease K
Aliases
GeneCards (Weizmann)RNASEK
Ensembl hg19 (Hinxton)ENSG00000219200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000219200 [Gene_View]  chr17:7012417-7014533 [Contig_View]  RNASEK [Vega]
ICGC DataPortalENSG00000219200
TCGA cBioPortalRNASEK
AceView (NCBI)RNASEK
Genatlas (Paris)RNASEK
WikiGenes440400
SOURCE (Princeton)RNASEK
Genetics Home Reference (NIH)RNASEK
Genomic and cartography
GoldenPath hg38 (UCSC)RNASEK  -     chr17:7012417-7014533 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNASEK  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblRNASEK - 17p13.1 [CytoView hg19]  RNASEK - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIRNASEK [Mapview hg19]  RNASEK [Mapview hg38]
OMIM617098   
Gene and transcription
Genbank (Entrez)AA633512 AA843796 AK289930 AM746459 BC032510
RefSeq transcript (Entrez)NM_001004333
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNASEK
Cluster EST : UnigeneHs.632232 [ NCBI ]
CGAP (NCI)Hs.632232
Alternative Splicing GalleryENSG00000219200
Gene ExpressionRNASEK [ NCBI-GEO ]   RNASEK [ EBI - ARRAY_EXPRESS ]   RNASEK [ SEEK ]   RNASEK [ MEM ]
Gene Expression Viewer (FireBrowse)RNASEK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440400
GTEX Portal (Tissue expression)RNASEK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P5S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P5S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P5S7
Splice isoforms : SwissVarQ6P5S7
PhosPhoSitePlusQ6P5S7
Domains : Interpro (EBI)RNase_K   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNASEK
DMDM Disease mutations440400
Blocks (Seattle)RNASEK
SuperfamilyQ6P5S7
Human Protein AtlasENSG00000219200
Peptide AtlasQ6P5S7
HPRD17568
IPIIPI00418454   IPI00784802   IPI01021881   IPI01021722   IPI01021861   IPI01022021   IPI01022214   IPI01022380   
Protein Interaction databases
DIP (DOE-UCLA)Q6P5S7
IntAct (EBI)Q6P5S7
FunCoupENSG00000219200
BioGRIDRNASEK
STRING (EMBL)RNASEK
ZODIACRNASEK
Ontologies - Pathways
QuickGOQ6P5S7
Ontology : AmiGOendoribonuclease activity  cellular_component  rRNA transcription  integral component of membrane  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBIendoribonuclease activity  cellular_component  rRNA transcription  integral component of membrane  RNA phosphodiester bond hydrolysis, endonucleolytic  
NDEx NetworkRNASEK
Atlas of Cancer Signalling NetworkRNASEK
Wikipedia pathwaysRNASEK
Orthology - Evolution
OrthoDB440400
GeneTree (enSembl)ENSG00000219200
Phylogenetic Trees/Animal Genes : TreeFamRNASEK
HOVERGENQ6P5S7
HOGENOMQ6P5S7
Homologs : HomoloGeneRNASEK
Homology/Alignments : Family Browser (UCSC)RNASEK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNASEK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNASEK
dbVarRNASEK
ClinVarRNASEK
1000_GenomesRNASEK 
Exome Variant ServerRNASEK
ExAC (Exome Aggregation Consortium)RNASEK (select the gene name)
Genetic variants : HAPMAP440400
Genomic Variants (DGV)RNASEK [DGVbeta]
DECIPHERRNASEK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNASEK 
Mutations
ICGC Data PortalRNASEK 
TCGA Data PortalRNASEK 
Broad Tumor PortalRNASEK
OASIS PortalRNASEK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNASEK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNASEK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNASEK
DgiDB (Drug Gene Interaction Database)RNASEK
DoCM (Curated mutations)RNASEK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNASEK (select a term)
intoGenRNASEK
Cancer3DRNASEK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617098   
Orphanet
MedgenRNASEK
Genetic Testing Registry RNASEK
NextProtQ6P5S7 [Medical]
TSGene440400
GENETestsRNASEK
Target ValidationRNASEK
Huge Navigator RNASEK [HugePedia]
snp3D : Map Gene to Disease440400
BioCentury BCIQRNASEK
ClinGenRNASEK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440400
Chemical/Pharm GKB GenePA162401458
Clinical trialRNASEK
Miscellaneous
canSAR (ICR)RNASEK (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNASEK
EVEXRNASEK
GoPubMedRNASEK
iHOPRNASEK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:23 CEST 2017

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