Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RND1 (Rho family GTPase 1)

Identity

Alias_namesmember S
Alias_symbol (synonym)Rho6
ARHS
RHOS
Other aliasRHO6
HGNC (Hugo) RND1
LocusID (NCBI) 27289
Atlas_Id 43473
Location 12q13.12  [Link to chromosome band 12q13]
Location_base_pair Starts at 48857133 and ends at 48865870 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RND1   18314
Cards
Entrez_Gene (NCBI)RND1  27289  Rho family GTPase 1
AliasesARHS; RHO6; RHOS
GeneCards (Weizmann)RND1
Ensembl hg19 (Hinxton)ENSG00000172602 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172602 [Gene_View]  chr12:48857133-48865870 [Contig_View]  RND1 [Vega]
ICGC DataPortalENSG00000172602
TCGA cBioPortalRND1
AceView (NCBI)RND1
Genatlas (Paris)RND1
WikiGenes27289
SOURCE (Princeton)RND1
Genetics Home Reference (NIH)RND1
Genomic and cartography
GoldenPath hg38 (UCSC)RND1  -     chr12:48857133-48865870 -  12q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RND1  -     12q13.12   [Description]    (hg19-Feb_2009)
EnsemblRND1 - 12q13.12 [CytoView hg19]  RND1 - 12q13.12 [CytoView hg38]
Mapping of homologs : NCBIRND1 [Mapview hg19]  RND1 [Mapview hg38]
OMIM609038   
Gene and transcription
Genbank (Entrez)AB040147 AF498967 AK124288 AK292762 AL359573
RefSeq transcript (Entrez)NM_014470
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RND1
Cluster EST : UnigeneHs.124940 [ NCBI ]
CGAP (NCI)Hs.124940
Alternative Splicing GalleryENSG00000172602
Gene ExpressionRND1 [ NCBI-GEO ]   RND1 [ EBI - ARRAY_EXPRESS ]   RND1 [ SEEK ]   RND1 [ MEM ]
Gene Expression Viewer (FireBrowse)RND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27289
GTEX Portal (Tissue expression)RND1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92730   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92730  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92730
Splice isoforms : SwissVarQ92730
PhosPhoSitePlusQ92730
Domaine pattern : Prosite (Expaxy)RHO (PS51420)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RND1
DMDM Disease mutations27289
Blocks (Seattle)RND1
PDB (SRS)2CLS    2REX    3Q3J   
PDB (PDBSum)2CLS    2REX    3Q3J   
PDB (IMB)2CLS    2REX    3Q3J   
PDB (RSDB)2CLS    2REX    3Q3J   
Structural Biology KnowledgeBase2CLS    2REX    3Q3J   
SCOP (Structural Classification of Proteins)2CLS    2REX    3Q3J   
CATH (Classification of proteins structures)2CLS    2REX    3Q3J   
SuperfamilyQ92730
Human Protein AtlasENSG00000172602
Peptide AtlasQ92730
HPRD12357
IPIIPI00023211   IPI01021746   IPI01021607   
Protein Interaction databases
DIP (DOE-UCLA)Q92730
IntAct (EBI)Q92730
FunCoupENSG00000172602
BioGRIDRND1
STRING (EMBL)RND1
ZODIACRND1
Ontologies - Pathways
QuickGOQ92730
Ontology : AmiGOGTPase activity  receptor binding  protein binding  GTP binding  cytosol  plasma membrane  adherens junction  actin filament organization  negative regulation of cell adhesion  small GTPase mediated signal transduction  actin cytoskeleton  neuron remodeling  intracellular membrane-bounded organelle  
Ontology : EGO-EBIGTPase activity  receptor binding  protein binding  GTP binding  cytosol  plasma membrane  adherens junction  actin filament organization  negative regulation of cell adhesion  small GTPase mediated signal transduction  actin cytoskeleton  neuron remodeling  intracellular membrane-bounded organelle  
Pathways : KEGGAxon guidance   
NDEx NetworkRND1
Atlas of Cancer Signalling NetworkRND1
Wikipedia pathwaysRND1
Orthology - Evolution
OrthoDB27289
GeneTree (enSembl)ENSG00000172602
Phylogenetic Trees/Animal Genes : TreeFamRND1
HOVERGENQ92730
HOGENOMQ92730
Homologs : HomoloGeneRND1
Homology/Alignments : Family Browser (UCSC)RND1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRND1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RND1
dbVarRND1
ClinVarRND1
1000_GenomesRND1 
Exome Variant ServerRND1
ExAC (Exome Aggregation Consortium)RND1 (select the gene name)
Genetic variants : HAPMAP27289
Genomic Variants (DGV)RND1 [DGVbeta]
DECIPHERRND1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRND1 
Mutations
ICGC Data PortalRND1 
TCGA Data PortalRND1 
Broad Tumor PortalRND1
OASIS PortalRND1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRND1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRND1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RND1
DgiDB (Drug Gene Interaction Database)RND1
DoCM (Curated mutations)RND1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RND1 (select a term)
intoGenRND1
Cancer3DRND1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609038   
Orphanet
MedgenRND1
Genetic Testing Registry RND1
NextProtQ92730 [Medical]
TSGene27289
GENETestsRND1
Target ValidationRND1
Huge Navigator RND1 [HugePedia]
snp3D : Map Gene to Disease27289
BioCentury BCIQRND1
ClinGenRND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27289
Chemical/Pharm GKB GenePA134972408
Clinical trialRND1
Miscellaneous
canSAR (ICR)RND1 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRND1
EVEXRND1
GoPubMedRND1
iHOPRND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:56 CEST 2017

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