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RNF10 (ring finger protein 10)

Identity

Other namesRIE2
HGNC (Hugo) RNF10
LocusID (NCBI) 9921
Location 12q24.31
Location_base_pair Starts at 120972132 and ends at 121015397 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNF10   10055
Entrez_Gene (NCBI)RNF10  9921  ring finger protein 10
Cards
GeneCards (Weizmann)RNF10
Ensembl (Hinxton)ENSG00000022840 [Gene_View]  chr12:120972132-121015397 [Contig_View]  RNF10 [Vega]
AceView (NCBI)RNF10
Genatlas (Paris)RNF10
SOURCE (Stanford)NM_014868
Genomic and cartography
GoldenPath (UCSC)RNF10  -  12q24.31   chr12:120972132-121015397 +  12q24.31   [Description]    (hg19-Feb_2009)
EnsemblRNF10 - 12q24.31 [CytoView]
Mapping of homologs : NCBIRNF10 [Mapview]
Gene and transcription
Genbank (Entrez)AB027196 AK094011 AK097807 AK126274 AK301608
RefSeq transcript (SRS)NM_014868
RefSeq transcript (Entrez)NM_014868
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_009775 NW_001838063 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009775 NW_001838063 NW_004078075
Consensus coding sequences : CCDS (NCBI)RNF10
Cluster EST : UnigeneHs.442798 [ SRS ] Hs.442798 [ NCBI ]
CGAP (NCI)Hs.442798
Alternative Splicing : Fast-db (Paris)GSHG0007059
Alternative Splicing GalleryENSG00000022840
Gene ExpressionRNF10 [ NCBI-GEO ]   RNF10 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5U6 (SRS) Q8N5U6 (Uniprot)
NextProtQ8N5U6
With graphics : InterProQ8N5U6
Splice isoforms : SwissVarQ8N5U6(Swissvar)
Domaine pattern : Prosite (SRS)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Related proteins : CluSTrQ8N5U6
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
DMDM9921
Blocks (Seattle)Q8N5U6
Human Protein AtlasENSG00000022840
HPRD11496
IPIIPI00550496   IPI00790489   IPI01012206   IPI01011678   IPI01011215   IPI01010671   IPI01010262   IPI01009295   IPI01010646   IPI01015392   IPI01009726   IPI01014457   IPI01015755   IPI01013574   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5U6
IntAct (EBI)Q8N5U6
FunCoupENSG00000022840
REACTOMERNF10
Protein Interaction Database9921
BioGRIDRNF10
InParanoidQ8N5U6
Interologous Interaction database Q8N5U6
IntegromeDBRNF10
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RNF10
SNP (GeneSNP Utah)RNF10
SNP : HGBaseRNF10
Genetic variants : HAPMAPRNF10
Somatic Mutations in Cancer : COSMICRNF10 
CONAN: Copy Number AnalysisRNF10 
Mutations and Diseases : HGMDRNF10
OMIM
GENETests
Disease Genetic AssociationRNF10
Huge Navigator RNF10 [HugePedia]  RNF10 [HugeCancerGEM]
Genomic VariantsRNF10  RNF10 [DGVbeta]
ClinVarRNF10
snp3D : Map Gene to Disease9921
General knowledge
Homologs : HomoloGeneRNF10
Homology/Alignments : Family Browser (UCSC)RNF10
Phylogenetic Trees/Animal Genes : TreeFamRNF10
Chemical/Protein Interactions : CTD9921
Chemical/Pharm GKB GenePA34419
Clinical trialRNF10
Cancer Resource (Charite)ENSG00000022840
Ontology : AmiGOprotein binding  nucleus  cytoplasm  transcription, DNA-dependent  zinc ion binding  negative regulation of Schwann cell proliferation  positive regulation of myelination  transcription regulatory region DNA binding  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  transcription, DNA-dependent  zinc ion binding  negative regulation of Schwann cell proliferation  positive regulation of myelination  transcription regulatory region DNA binding  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneRNF10
iHOPRNF10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:49:18 CEST 2013
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