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RNF112 (ring finger protein 112)

Identity

Alias_namesZNF179
zinc finger protein 179
Alias_symbol (synonym)BFP
Other alias
HGNC (Hugo) RNF112
LocusID (NCBI) 7732
Atlas_Id 72681
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 19411178 and ends at 19417276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAPK7 (17p11.2) / RNF112 (17p11.2)RNF112 (17p11.2) / TNRC6A (16p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF112   12968
Cards
Entrez_Gene (NCBI)RNF112  7732  ring finger protein 112
AliasesBFP; ZNF179
GeneCards (Weizmann)RNF112
Ensembl hg19 (Hinxton)ENSG00000128482 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128482 [Gene_View]  chr17:19411178-19417276 [Contig_View]  RNF112 [Vega]
ICGC DataPortalENSG00000128482
TCGA cBioPortalRNF112
AceView (NCBI)RNF112
Genatlas (Paris)RNF112
WikiGenes7732
SOURCE (Princeton)RNF112
Genetics Home Reference (NIH)RNF112
Genomic and cartography
GoldenPath hg38 (UCSC)RNF112  -     chr17:19411178-19417276 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF112  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblRNF112 - 17p11.2 [CytoView hg19]  RNF112 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIRNF112 [Mapview hg19]  RNF112 [Mapview hg38]
OMIM601237   
Gene and transcription
Genbank (Entrez)AB026054 AI952967 AK226052 AK293508 AK309372
RefSeq transcript (Entrez)NM_007148
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF112
Cluster EST : UnigeneHs.189482 [ NCBI ]
CGAP (NCI)Hs.189482
Alternative Splicing GalleryENSG00000128482
Gene ExpressionRNF112 [ NCBI-GEO ]   RNF112 [ EBI - ARRAY_EXPRESS ]   RNF112 [ SEEK ]   RNF112 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF112 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7732
GTEX Portal (Tissue expression)RNF112
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULX5
Splice isoforms : SwissVarQ9ULX5
PhosPhoSitePlusQ9ULX5
Domaine pattern : Prosite (Expaxy)G_GB1_RHD3 (PS51715)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)G_GB1_RHD3_dom    Guanylate-bd_N    P-loop_NTPase    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)GBP (PF02263)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam02263    pfam00097   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF112
DMDM Disease mutations7732
Blocks (Seattle)RNF112
SuperfamilyQ9ULX5
Human Protein AtlasENSG00000128482
Peptide AtlasQ9ULX5
HPRD03140
IPIIPI00026688   IPI00795586   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULX5
IntAct (EBI)Q9ULX5
FunCoupENSG00000128482
BioGRIDRNF112
STRING (EMBL)RNF112
ZODIACRNF112
Ontologies - Pathways
QuickGOQ9ULX5
Ontology : AmiGOGTPase activity  GTP binding  nucleus  cytoplasm  zinc ion binding  integral component of membrane  positive regulation of neuron differentiation  positive regulation of glial cell differentiation  positive regulation of cell cycle arrest  
Ontology : EGO-EBIGTPase activity  GTP binding  nucleus  cytoplasm  zinc ion binding  integral component of membrane  positive regulation of neuron differentiation  positive regulation of glial cell differentiation  positive regulation of cell cycle arrest  
NDEx NetworkRNF112
Atlas of Cancer Signalling NetworkRNF112
Wikipedia pathwaysRNF112
Orthology - Evolution
OrthoDB7732
GeneTree (enSembl)ENSG00000128482
Phylogenetic Trees/Animal Genes : TreeFamRNF112
HOVERGENQ9ULX5
HOGENOMQ9ULX5
Homologs : HomoloGeneRNF112
Homology/Alignments : Family Browser (UCSC)RNF112
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF112 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF112
dbVarRNF112
ClinVarRNF112
1000_GenomesRNF112 
Exome Variant ServerRNF112
ExAC (Exome Aggregation Consortium)RNF112 (select the gene name)
Genetic variants : HAPMAP7732
Genomic Variants (DGV)RNF112 [DGVbeta]
DECIPHERRNF112 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF112 
Mutations
ICGC Data PortalRNF112 
TCGA Data PortalRNF112 
Broad Tumor PortalRNF112
OASIS PortalRNF112 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRNF112
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF112
DgiDB (Drug Gene Interaction Database)RNF112
DoCM (Curated mutations)RNF112 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF112 (select a term)
intoGenRNF112
Cancer3DRNF112(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601237   
Orphanet
MedgenRNF112
Genetic Testing Registry RNF112
NextProtQ9ULX5 [Medical]
TSGene7732
GENETestsRNF112
Target ValidationRNF112
Huge Navigator RNF112 [HugePedia]
snp3D : Map Gene to Disease7732
BioCentury BCIQRNF112
ClinGenRNF112
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7732
Chemical/Pharm GKB GenePA162401469
Clinical trialRNF112
Miscellaneous
canSAR (ICR)RNF112 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF112
EVEXRNF112
GoPubMedRNF112
iHOPRNF112
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:23 CEST 2017

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