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RNF113A (ring finger protein 113A)

Identity

Alias_namesZNF183
zinc finger protein 183 (RING finger, C3HC4 type)
Alias_symbol (synonym)RNF113
Cwc24
Other aliasTTD5
HGNC (Hugo) RNF113A
LocusID (NCBI) 7737
Atlas_Id 72682
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 119870532 and ends at 119871828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF113A   12974
Cards
Entrez_Gene (NCBI)RNF113A  7737  ring finger protein 113A
AliasesCwc24; RNF113; TTD5; ZNF183
GeneCards (Weizmann)RNF113A
Ensembl hg19 (Hinxton)ENSG00000125352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125352 [Gene_View]  chrX:119870532-119871828 [Contig_View]  RNF113A [Vega]
ICGC DataPortalENSG00000125352
TCGA cBioPortalRNF113A
AceView (NCBI)RNF113A
Genatlas (Paris)RNF113A
WikiGenes7737
SOURCE (Princeton)RNF113A
Genetics Home Reference (NIH)RNF113A
Genomic and cartography
GoldenPath hg38 (UCSC)RNF113A  -     chrX:119870532-119871828 -  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF113A  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblRNF113A - Xq24 [CytoView hg19]  RNF113A - Xq24 [CytoView hg38]
Mapping of homologs : NCBIRNF113A [Mapview hg19]  RNF113A [Mapview hg38]
OMIM300951   300953   
Gene and transcription
Genbank (Entrez)AF086291 AK314778 AW001915 BC000832 BC020556
RefSeq transcript (Entrez)NM_006978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF113A
Cluster EST : UnigeneHs.458365 [ NCBI ]
CGAP (NCI)Hs.458365
Alternative Splicing GalleryENSG00000125352
Gene ExpressionRNF113A [ NCBI-GEO ]   RNF113A [ EBI - ARRAY_EXPRESS ]   RNF113A [ SEEK ]   RNF113A [ MEM ]
Gene Expression Viewer (FireBrowse)RNF113A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7737
GTEX Portal (Tissue expression)RNF113A
Human Protein AtlasENSG00000125352-RNF113A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15541   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15541  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15541
Splice isoforms : SwissVarO15541
PhosPhoSitePlusO15541
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_CCCH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)RING (SM00184)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)RNF113A
DMDM Disease mutations7737
Blocks (Seattle)RNF113A
SuperfamilyO15541
Human Protein Atlas [tissue]ENSG00000125352-RNF113A [tissue]
Peptide AtlasO15541
HPRD06760
IPIIPI00007343   IPI00982737   
Protein Interaction databases
DIP (DOE-UCLA)O15541
IntAct (EBI)O15541
FunCoupENSG00000125352
BioGRIDRNF113A
STRING (EMBL)RNF113A
ZODIACRNF113A
Ontologies - Pathways
QuickGOO15541
Ontology : AmiGOprotein binding  U2-type spliceosomal complex  zinc ion binding  snoRNA splicing  mRNA cis splicing, via spliceosome  
Ontology : EGO-EBIprotein binding  U2-type spliceosomal complex  zinc ion binding  snoRNA splicing  mRNA cis splicing, via spliceosome  
NDEx NetworkRNF113A
Atlas of Cancer Signalling NetworkRNF113A
Wikipedia pathwaysRNF113A
Orthology - Evolution
OrthoDB7737
GeneTree (enSembl)ENSG00000125352
Phylogenetic Trees/Animal Genes : TreeFamRNF113A
HOVERGENO15541
HOGENOMO15541
Homologs : HomoloGeneRNF113A
Homology/Alignments : Family Browser (UCSC)RNF113A
Gene fusions - Rearrangements
Tumor Fusion PortalRNF113A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF113A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF113A
dbVarRNF113A
ClinVarRNF113A
1000_GenomesRNF113A 
Exome Variant ServerRNF113A
ExAC (Exome Aggregation Consortium)ENSG00000125352
GNOMAD BrowserENSG00000125352
Genetic variants : HAPMAP7737
Genomic Variants (DGV)RNF113A [DGVbeta]
DECIPHERRNF113A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF113A 
Mutations
ICGC Data PortalRNF113A 
TCGA Data PortalRNF113A 
Broad Tumor PortalRNF113A
OASIS PortalRNF113A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF113A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF113A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RNF113A
DgiDB (Drug Gene Interaction Database)RNF113A
DoCM (Curated mutations)RNF113A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF113A (select a term)
intoGenRNF113A
Cancer3DRNF113A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300951    300953   
Orphanet10319   
DisGeNETRNF113A
MedgenRNF113A
Genetic Testing Registry RNF113A
NextProtO15541 [Medical]
TSGene7737
GENETestsRNF113A
Target ValidationRNF113A
Huge Navigator RNF113A [HugePedia]
snp3D : Map Gene to Disease7737
BioCentury BCIQRNF113A
ClinGenRNF113A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7737
Chemical/Pharm GKB GenePA37556
Clinical trialRNF113A
Miscellaneous
canSAR (ICR)RNF113A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF113A
EVEXRNF113A
GoPubMedRNF113A
iHOPRNF113A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:29 CET 2017

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