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RNF113B (ring finger protein 113B)

Identity

Alias_namesZNF183L1
zinc finger protein 183-like 1
Alias_symbol (synonym)RNF161
Other aliasbA10G5.1
HGNC (Hugo) RNF113B
LocusID (NCBI) 140432
Atlas_Id 72683
Location 13q32.2  [Link to chromosome band 13q32]
Location_base_pair Starts at 98175785 and ends at 98177267 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF113B   17267
Cards
Entrez_Gene (NCBI)RNF113B  140432  ring finger protein 113B
AliasesRNF161; ZNF183L1; bA10G5.1
GeneCards (Weizmann)RNF113B
Ensembl hg19 (Hinxton)ENSG00000139797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139797 [Gene_View]  chr13:98175785-98177267 [Contig_View]  RNF113B [Vega]
ICGC DataPortalENSG00000139797
TCGA cBioPortalRNF113B
AceView (NCBI)RNF113B
Genatlas (Paris)RNF113B
WikiGenes140432
SOURCE (Princeton)RNF113B
Genetics Home Reference (NIH)RNF113B
Genomic and cartography
GoldenPath hg38 (UCSC)RNF113B  -     chr13:98175785-98177267 -  13q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF113B  -     13q32.2   [Description]    (hg19-Feb_2009)
EnsemblRNF113B - 13q32.2 [CytoView hg19]  RNF113B - 13q32.2 [CytoView hg38]
Mapping of homologs : NCBIRNF113B [Mapview hg19]  RNF113B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF539427 AI935007 BC017585 BC025388 EU446571
RefSeq transcript (Entrez)NM_178861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF113B
Cluster EST : UnigeneHs.296045 [ NCBI ]
CGAP (NCI)Hs.296045
Alternative Splicing GalleryENSG00000139797
Gene ExpressionRNF113B [ NCBI-GEO ]   RNF113B [ EBI - ARRAY_EXPRESS ]   RNF113B [ SEEK ]   RNF113B [ MEM ]
Gene Expression Viewer (FireBrowse)RNF113B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140432
GTEX Portal (Tissue expression)RNF113B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZP6
Splice isoforms : SwissVarQ8IZP6
PhosPhoSitePlusQ8IZP6
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_CCCH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)RING (SM00184)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)RNF113B
DMDM Disease mutations140432
Blocks (Seattle)RNF113B
PDB (SRS)2CSY   
PDB (PDBSum)2CSY   
PDB (IMB)2CSY   
PDB (RSDB)2CSY   
Structural Biology KnowledgeBase2CSY   
SCOP (Structural Classification of Proteins)2CSY   
CATH (Classification of proteins structures)2CSY   
SuperfamilyQ8IZP6
Human Protein AtlasENSG00000139797
Peptide AtlasQ8IZP6
HPRD15745
IPIIPI00647897   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZP6
IntAct (EBI)Q8IZP6
FunCoupENSG00000139797
BioGRIDRNF113B
STRING (EMBL)RNF113B
ZODIACRNF113B
Ontologies - Pathways
QuickGOQ8IZP6
Ontology : AmiGOU2-type spliceosomal complex  zinc ion binding  snoRNA splicing  mRNA cis splicing, via spliceosome  
Ontology : EGO-EBIU2-type spliceosomal complex  zinc ion binding  snoRNA splicing  mRNA cis splicing, via spliceosome  
NDEx NetworkRNF113B
Atlas of Cancer Signalling NetworkRNF113B
Wikipedia pathwaysRNF113B
Orthology - Evolution
OrthoDB140432
GeneTree (enSembl)ENSG00000139797
Phylogenetic Trees/Animal Genes : TreeFamRNF113B
HOVERGENQ8IZP6
HOGENOMQ8IZP6
Homologs : HomoloGeneRNF113B
Homology/Alignments : Family Browser (UCSC)RNF113B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF113B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF113B
dbVarRNF113B
ClinVarRNF113B
1000_GenomesRNF113B 
Exome Variant ServerRNF113B
ExAC (Exome Aggregation Consortium)RNF113B (select the gene name)
Genetic variants : HAPMAP140432
Genomic Variants (DGV)RNF113B [DGVbeta]
DECIPHERRNF113B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF113B 
Mutations
ICGC Data PortalRNF113B 
TCGA Data PortalRNF113B 
Broad Tumor PortalRNF113B
OASIS PortalRNF113B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF113B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF113B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF113B
DgiDB (Drug Gene Interaction Database)RNF113B
DoCM (Curated mutations)RNF113B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF113B (select a term)
intoGenRNF113B
Cancer3DRNF113B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF113B
Genetic Testing Registry RNF113B
NextProtQ8IZP6 [Medical]
TSGene140432
GENETestsRNF113B
Target ValidationRNF113B
Huge Navigator RNF113B [HugePedia]
snp3D : Map Gene to Disease140432
BioCentury BCIQRNF113B
ClinGenRNF113B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140432
Chemical/Pharm GKB GenePA38217
Clinical trialRNF113B
Miscellaneous
canSAR (ICR)RNF113B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF113B
EVEXRNF113B
GoPubMedRNF113B
iHOPRNF113B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:24 CEST 2017

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