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RNF114 (ring finger protein 114)

Identity

Alias (NCBI)PSORS12
ZNF313
HGNC (Hugo) RNF114
HGNC Alias symbPSORS12
HGNC Previous nameZNF313
HGNC Previous namezinc finger protein 313
LocusID (NCBI) 55905
Atlas_Id 72684
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49936397 and ends at 49953885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANXA2 (15q22.2) / RNF114 (20q13.13)BAG2 (6p11.2) / RNF114 (20q13.13)RNF114 (20q13.13) / ACTG1 (17q25.3)
RNF114 (20q13.13) / EZR (6q25.3)RNF114 (20q13.13) / RNF114 (20q13.13)UBE2V1 (20q13.13) / RNF114 (20q13.13)
ANXA2 RNF114BAG2 RNF114

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RNF114   13094
Cards
Entrez_Gene (NCBI)RNF114    ring finger protein 114
AliasesPSORS12; ZNF313
GeneCards (Weizmann)RNF114
Ensembl hg19 (Hinxton)ENSG00000124226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124226 [Gene_View]  ENSG00000124226 [Sequence]  chr20:49936397-49953885 [Contig_View]  RNF114 [Vega]
ICGC DataPortalENSG00000124226
TCGA cBioPortalRNF114
AceView (NCBI)RNF114
Genatlas (Paris)RNF114
SOURCE (Princeton)RNF114
Genetics Home Reference (NIH)RNF114
Genomic and cartography
GoldenPath hg38 (UCSC)RNF114  -     chr20:49936397-49953885 +  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF114  -     20q13.13   [Description]    (hg19-Feb_2009)
GoldenPathRNF114 - 20q13.13 [CytoView hg19]  RNF114 - 20q13.13 [CytoView hg38]
ImmunoBaseENSG00000124226
Genome Data Viewer NCBIRNF114 [Mapview hg19]  
OMIM612451   
Gene and transcription
Genbank (Entrez)AF131742 AF265215 AK091976 AK097265 AK297188
RefSeq transcript (Entrez)NM_018683
Consensus coding sequences : CCDS (NCBI)RNF114
Gene ExpressionRNF114 [ NCBI-GEO ]   RNF114 [ EBI - ARRAY_EXPRESS ]   RNF114 [ SEEK ]   RNF114 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF114 [ Firebrowse - Broad ]
GenevisibleExpression of RNF114 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55905
GTEX Portal (Tissue expression)RNF114
Human Protein AtlasENSG00000124226-RNF114 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y508   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y508  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y508
PhosPhoSitePlusQ9Y508
Domaine pattern : Prosite (Expaxy)ZF_C2HC_RNF (PS51803)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Di19_Zn-bd    RNF114_RING-HC    ZF_C2HC_RNF    Znf-RING_LisH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-Di19 (PF05605)    zf-RING_UBOX (PF13445)    zf_C2HC_14 (PF18574)   
Domain families : Pfam (NCBI)pfam05605    pfam13445    pfam18574   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF114
SuperfamilyQ9Y508
AlphaFold pdb e-kbQ9Y508   
Human Protein Atlas [tissue]ENSG00000124226-RNF114 [tissue]
HPRD10329
Protein Interaction databases
DIP (DOE-UCLA)Q9Y508
IntAct (EBI)Q9Y508
BioGRIDRNF114
STRING (EMBL)RNF114
ZODIACRNF114
Ontologies - Pathways
QuickGOQ9Y508
Ontology : AmiGOprotein polyubiquitination  protein polyubiquitination  protein binding  nucleus  cytosol  cytosol  plasma membrane  ubiquitin-dependent protein catabolic process  multicellular organism development  spermatogenesis  cell differentiation  metal ion binding  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  protein polyubiquitination  protein binding  nucleus  cytosol  cytosol  plasma membrane  ubiquitin-dependent protein catabolic process  multicellular organism development  spermatogenesis  cell differentiation  metal ion binding  ubiquitin protein ligase activity  
NDEx NetworkRNF114
Atlas of Cancer Signalling NetworkRNF114
Wikipedia pathwaysRNF114
Orthology - Evolution
OrthoDB55905
GeneTree (enSembl)ENSG00000124226
Phylogenetic Trees/Animal Genes : TreeFamRNF114
Homologs : HomoloGeneRNF114
Homology/Alignments : Family Browser (UCSC)RNF114
Gene fusions - Rearrangements
Fusion : QuiverRNF114
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF114 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF114
dbVarRNF114
ClinVarRNF114
MonarchRNF114
1000_GenomesRNF114 
Exome Variant ServerRNF114
GNOMAD BrowserENSG00000124226
Varsome BrowserRNF114
ACMGRNF114 variants
VarityQ9Y508
Genomic Variants (DGV)RNF114 [DGVbeta]
DECIPHERRNF114 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF114 
Mutations
ICGC Data PortalRNF114 
TCGA Data PortalRNF114 
Broad Tumor PortalRNF114
OASIS PortalRNF114 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF114  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNF114
Mutations and Diseases : HGMDRNF114
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRNF114
DgiDB (Drug Gene Interaction Database)RNF114
DoCM (Curated mutations)RNF114
CIViC (Clinical Interpretations of Variants in Cancer)RNF114
Cancer3DRNF114
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612451   
Orphanet
DisGeNETRNF114
MedgenRNF114
Genetic Testing Registry RNF114
NextProtQ9Y508 [Medical]
GENETestsRNF114
Target ValidationRNF114
Huge Navigator RNF114 [HugePedia]
ClinGenRNF114
Clinical trials, drugs, therapy
MyCancerGenomeRNF114
Protein Interactions : CTDRNF114
Pharm GKB GenePA162401502
PharosQ9Y508
Clinical trialRNF114
Miscellaneous
canSAR (ICR)RNF114
HarmonizomeRNF114
DataMed IndexRNF114
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRNF114
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:18:43 CEST 2021

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