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RNF114 (ring finger protein 114)

Identity

Alias_namesZNF313
zinc finger protein 313
Alias_symbol (synonym)PSORS12
Other alias
HGNC (Hugo) RNF114
LocusID (NCBI) 55905
Atlas_Id 72684
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49936377 and ends at 49953885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANXA2 (15q22.2) / RNF114 (20q13.13)BAG2 (6p11.2) / RNF114 (20q13.13)RNF114 (20q13.13) / ACTG1 (17q25.3)
RNF114 (20q13.13) / EZR (6q25.3)RNF114 (20q13.13) / RNF114 (20q13.13)UBE2V1 (20q13.13) / RNF114 (20q13.13)
ANXA2 RNF114BAG2 RNF114

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF114   13094
Cards
Entrez_Gene (NCBI)RNF114  55905  ring finger protein 114
AliasesPSORS12; ZNF313
GeneCards (Weizmann)RNF114
Ensembl hg19 (Hinxton)ENSG00000124226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124226 [Gene_View]  chr20:49936377-49953885 [Contig_View]  RNF114 [Vega]
ICGC DataPortalENSG00000124226
TCGA cBioPortalRNF114
AceView (NCBI)RNF114
Genatlas (Paris)RNF114
WikiGenes55905
SOURCE (Princeton)RNF114
Genetics Home Reference (NIH)RNF114
Genomic and cartography
GoldenPath hg38 (UCSC)RNF114  -     chr20:49936377-49953885 +  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF114  -     20q13.13   [Description]    (hg19-Feb_2009)
EnsemblRNF114 - 20q13.13 [CytoView hg19]  RNF114 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBIRNF114 [Mapview hg19]  RNF114 [Mapview hg38]
OMIM612451   
Gene and transcription
Genbank (Entrez)AF131742 AF265215 AK091976 AK097265 AK297188
RefSeq transcript (Entrez)NM_018683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF114
Cluster EST : UnigeneHs.144949 [ NCBI ]
CGAP (NCI)Hs.144949
Alternative Splicing GalleryENSG00000124226
Gene ExpressionRNF114 [ NCBI-GEO ]   RNF114 [ EBI - ARRAY_EXPRESS ]   RNF114 [ SEEK ]   RNF114 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF114 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55905
GTEX Portal (Tissue expression)RNF114
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y508   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y508  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y508
Splice isoforms : SwissVarQ9Y508
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ9Y508
Domaine pattern : Prosite (Expaxy)ZF_C2HC_RNF (PS51803)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Di19_Zn_binding_dom    Znf-RING_LisH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-Di19 (PF05605)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam05605    pfam13445   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF114
DMDM Disease mutations55905
Blocks (Seattle)RNF114
SuperfamilyQ9Y508
Human Protein AtlasENSG00000124226
Peptide AtlasQ9Y508
HPRD10329
IPIIPI00032955   IPI00908327   IPI00908317   IPI00952952   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y508
IntAct (EBI)Q9Y508
FunCoupENSG00000124226
BioGRIDRNF114
STRING (EMBL)RNF114
ZODIACRNF114
Ontologies - Pathways
QuickGOQ9Y508
Ontology : AmiGOprotein polyubiquitination  protein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  intracellular  intracellular  nucleus  cytosol  cytosol  plasma membrane  multicellular organism development  spermatogenesis  zinc ion binding  cell differentiation  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  protein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  intracellular  intracellular  nucleus  cytosol  cytosol  plasma membrane  multicellular organism development  spermatogenesis  zinc ion binding  cell differentiation  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkRNF114
Atlas of Cancer Signalling NetworkRNF114
Wikipedia pathwaysRNF114
Orthology - Evolution
OrthoDB55905
GeneTree (enSembl)ENSG00000124226
Phylogenetic Trees/Animal Genes : TreeFamRNF114
HOVERGENQ9Y508
HOGENOMQ9Y508
Homologs : HomoloGeneRNF114
Homology/Alignments : Family Browser (UCSC)RNF114
Gene fusions - Rearrangements
Fusion: TCGAANXA2 RNF114
Fusion: TCGABAG2 RNF114
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF114 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF114
dbVarRNF114
ClinVarRNF114
1000_GenomesRNF114 
Exome Variant ServerRNF114
ExAC (Exome Aggregation Consortium)RNF114 (select the gene name)
Genetic variants : HAPMAP55905
Genomic Variants (DGV)RNF114 [DGVbeta]
DECIPHERRNF114 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF114 
Mutations
ICGC Data PortalRNF114 
TCGA Data PortalRNF114 
Broad Tumor PortalRNF114
OASIS PortalRNF114 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF114  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF114
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF114
DgiDB (Drug Gene Interaction Database)RNF114
DoCM (Curated mutations)RNF114 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF114 (select a term)
intoGenRNF114
Cancer3DRNF114(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612451   
Orphanet
MedgenRNF114
Genetic Testing Registry RNF114
NextProtQ9Y508 [Medical]
TSGene55905
GENETestsRNF114
Target ValidationRNF114
Huge Navigator RNF114 [HugePedia]
snp3D : Map Gene to Disease55905
BioCentury BCIQRNF114
ClinGenRNF114
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55905
Chemical/Pharm GKB GenePA162401502
Clinical trialRNF114
Miscellaneous
canSAR (ICR)RNF114 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF114
EVEXRNF114
GoPubMedRNF114
iHOPRNF114
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:51 CEST 2017

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