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RNF122 (ring finger protein 122)

Identity

Alias_symbol (synonym)FLJ12526
Other alias-
HGNC (Hugo) RNF122
LocusID (NCBI) 79845
Atlas_Id 47285
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 33547754 and ends at 33567128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNF122 (8p12) / DENND2A (7q34)RNF122 (8p12) / NEGR1 (1p31.1)RNF122 8p12 / NEGR1 1p31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF122   21147
Cards
Entrez_Gene (NCBI)RNF122  79845  ring finger protein 122
Aliases
GeneCards (Weizmann)RNF122
Ensembl hg19 (Hinxton)ENSG00000133874 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133874 [Gene_View]  chr8:33547754-33567128 [Contig_View]  RNF122 [Vega]
ICGC DataPortalENSG00000133874
TCGA cBioPortalRNF122
AceView (NCBI)RNF122
Genatlas (Paris)RNF122
WikiGenes79845
SOURCE (Princeton)RNF122
Genetics Home Reference (NIH)RNF122
Genomic and cartography
GoldenPath hg38 (UCSC)RNF122  -     chr8:33547754-33567128 -  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF122  -     8p12   [Description]    (hg19-Feb_2009)
EnsemblRNF122 - 8p12 [CytoView hg19]  RNF122 - 8p12 [CytoView hg38]
Mapping of homologs : NCBIRNF122 [Mapview hg19]  RNF122 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022588 AU124463 BC093884 BC101573 BF847236
RefSeq transcript (Entrez)NM_024787
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF122
Cluster EST : UnigeneHs.151237 [ NCBI ]
CGAP (NCI)Hs.151237
Alternative Splicing GalleryENSG00000133874
Gene ExpressionRNF122 [ NCBI-GEO ]   RNF122 [ EBI - ARRAY_EXPRESS ]   RNF122 [ SEEK ]   RNF122 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF122 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79845
GTEX Portal (Tissue expression)RNF122
Human Protein AtlasENSG00000133874-RNF122 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9V4
Splice isoforms : SwissVarQ9H9V4
PhosPhoSitePlusQ9H9V4
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF122
DMDM Disease mutations79845
Blocks (Seattle)RNF122
SuperfamilyQ9H9V4
Human Protein Atlas [tissue]ENSG00000133874-RNF122 [tissue]
Peptide AtlasQ9H9V4
HPRD11498
IPIIPI00015624   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9V4
IntAct (EBI)Q9H9V4
FunCoupENSG00000133874
BioGRIDRNF122
STRING (EMBL)RNF122
ZODIACRNF122
Ontologies - Pathways
QuickGOQ9H9V4
Ontology : AmiGOprotein polyubiquitination  endoplasmic reticulum  Golgi apparatus  zinc ion binding  integral component of membrane  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  endoplasmic reticulum  Golgi apparatus  zinc ion binding  integral component of membrane  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkRNF122
Atlas of Cancer Signalling NetworkRNF122
Wikipedia pathwaysRNF122
Orthology - Evolution
OrthoDB79845
GeneTree (enSembl)ENSG00000133874
Phylogenetic Trees/Animal Genes : TreeFamRNF122
HOVERGENQ9H9V4
HOGENOMQ9H9V4
Homologs : HomoloGeneRNF122
Homology/Alignments : Family Browser (UCSC)RNF122
Gene fusions - Rearrangements
Fusion : MitelmanRNF122/NEGR1 [8p12/1p31.1]  
Fusion: TCGA_MDACCRNF122 8p12 NEGR1 1p31.1 BRCA
Tumor Fusion PortalRNF122
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF122 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF122
dbVarRNF122
ClinVarRNF122
1000_GenomesRNF122 
Exome Variant ServerRNF122
ExAC (Exome Aggregation Consortium)ENSG00000133874
GNOMAD BrowserENSG00000133874
Genetic variants : HAPMAP79845
Genomic Variants (DGV)RNF122 [DGVbeta]
DECIPHERRNF122 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF122 
Mutations
ICGC Data PortalRNF122 
TCGA Data PortalRNF122 
Broad Tumor PortalRNF122
OASIS PortalRNF122 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF122  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF122
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF122
DgiDB (Drug Gene Interaction Database)RNF122
DoCM (Curated mutations)RNF122 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF122 (select a term)
intoGenRNF122
Cancer3DRNF122(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRNF122
MedgenRNF122
Genetic Testing Registry RNF122
NextProtQ9H9V4 [Medical]
TSGene79845
GENETestsRNF122
Target ValidationRNF122
Huge Navigator RNF122 [HugePedia]
snp3D : Map Gene to Disease79845
BioCentury BCIQRNF122
ClinGenRNF122
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79845
Chemical/Pharm GKB GenePA134892945
Clinical trialRNF122
Miscellaneous
canSAR (ICR)RNF122 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF122
EVEXRNF122
GoPubMedRNF122
iHOPRNF122
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:32:35 CET 2017

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