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RNF122 (ring finger protein 122)

Identity

Other names-
HGNC (Hugo) RNF122
LocusID (NCBI) 79845
Location 8p12
Location_base_pair Starts at 33405273 and ends at 33424643 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNF122   21147
Entrez_Gene (NCBI)RNF122  79845  ring finger protein 122
Cards
GeneCards (Weizmann)RNF122
Ensembl (Hinxton)ENSG00000133874 [Gene_View]  chr8:33405273-33424643 [Contig_View]  RNF122 [Vega]
AceView (NCBI)RNF122
Genatlas (Paris)RNF122
SOURCE (Stanford)NM_024787
Genomic and cartography
GoldenPath (UCSC)RNF122  -  8p12   chr8:33405273-33424643 -  8p12   [Description]    (hg19-Feb_2009)
EnsemblRNF122 - 8p12 [CytoView]
Mapping of homologs : NCBIRNF122 [Mapview]
Gene and transcription
Genbank (Entrez)AK022588 AU124463 BC093884 BC101573 BF847236
RefSeq transcript (SRS)NM_024787
RefSeq transcript (Entrez)NM_024787
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NT_167187 NW_001839128 NW_004078035
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NT_167187 NW_001839128 NW_004078035
Consensus coding sequences : CCDS (NCBI)RNF122
Cluster EST : UnigeneHs.151237 [ SRS ] Hs.151237 [ NCBI ]
CGAP (NCI)Hs.151237
Alternative Splicing : Fast-db (Paris)GSHG0029519
Alternative Splicing GalleryENSG00000133874
Gene ExpressionRNF122 [ NCBI-GEO ]   RNF122 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9V4 (SRS) Q9H9V4 (Uniprot)
NextProtQ9H9V4
With graphics : InterProQ9H9V4
Splice isoforms : SwissVarQ9H9V4(Swissvar)
Domaine pattern : Prosite (SRS)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)Znf_RING    Znf_RING/FYVE/PHD   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Related proteins : CluSTrQ9H9V4
Domain families : Pfam (SRS)zf-RING_2 (PF13639)   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
DMDM79845
Blocks (Seattle)Q9H9V4
Human Protein AtlasENSG00000133874
HPRD11498
IPIIPI00015624   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9V4
IntAct (EBI)Q9H9V4
FunCoupENSG00000133874
REACTOMERNF122
Protein Interaction Database79845
BioGRIDRNF122
InParanoidQ9H9V4
Interologous Interaction database Q9H9V4
IntegromeDBRNF122
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RNF122
SNP (GeneSNP Utah)RNF122
SNP : HGBaseRNF122
Genetic variants : HAPMAPRNF122
Somatic Mutations in Cancer : COSMICRNF122 
CONAN: Copy Number AnalysisRNF122 
Mutations and Diseases : HGMDRNF122
OMIM
GENETests
Disease Genetic AssociationRNF122
Huge Navigator RNF122 [HugePedia]  RNF122 [HugeCancerGEM]
Genomic VariantsRNF122  RNF122 [DGVbeta]
snp3D : Map Gene to Disease79845
General knowledge
Homologs : HomoloGeneRNF122
Homology/Alignments : Family Browser (UCSC)RNF122
Phylogenetic Trees/Animal Genes : TreeFamRNF122
Chemical/Protein Interactions : CTD79845
Chemical/Pharm GKB GenePA134892945
Clinical trialRNF122
Cancer Resource (Charite)ENSG00000133874
Ontology : AmiGOendoplasmic reticulum  Golgi apparatus  zinc ion binding  integral to membrane  metal ion binding  
Ontology : EGO-EBIendoplasmic reticulum  Golgi apparatus  zinc ion binding  integral to membrane  metal ion binding  
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
PubGeneRNF122
iHOPRNF122
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:37:40 CEST 2013
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