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RNF122 (ring finger protein 122)

Identity

Alias (NCBI)-
HGNC (Hugo) RNF122
HGNC Alias symbFLJ12526
LocusID (NCBI) 79845
Atlas_Id 47285
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 33547754 and ends at 33567128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNF122 (8p12)::DENND2A (7q34)RNF122 (8p12)::NEGR1 (1p31.1)RNF122 8p12::NEGR1 1p31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RNF122   21147
Cards
Entrez_Gene (NCBI)RNF122    ring finger protein 122
Aliases
GeneCards (Weizmann)RNF122
Ensembl hg19 (Hinxton)ENSG00000133874 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133874 [Gene_View]  ENSG00000133874 [Sequence]  chr8:33547754-33567128 [Contig_View]  RNF122 [Vega]
ICGC DataPortalENSG00000133874
TCGA cBioPortalRNF122
AceView (NCBI)RNF122
Genatlas (Paris)RNF122
SOURCE (Princeton)RNF122
Genetics Home Reference (NIH)RNF122
Genomic and cartography
GoldenPath hg38 (UCSC)RNF122  -     chr8:33547754-33567128 -  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF122  -     8p12   [Description]    (hg19-Feb_2009)
GoldenPathRNF122 - 8p12 [CytoView hg19]  RNF122 - 8p12 [CytoView hg38]
ImmunoBaseENSG00000133874
Genome Data Viewer NCBIRNF122 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK022588 AU124463 BC093884 BC101573 BF847236
RefSeq transcript (Entrez)NM_024787
Consensus coding sequences : CCDS (NCBI)RNF122
Gene ExpressionRNF122 [ NCBI-GEO ]   RNF122 [ EBI - ARRAY_EXPRESS ]   RNF122 [ SEEK ]   RNF122 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF122 [ Firebrowse - Broad ]
GenevisibleExpression of RNF122 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79845
GTEX Portal (Tissue expression)RNF122
Human Protein AtlasENSG00000133874-RNF122 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9V4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9V4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9V4
PhosPhoSitePlusQ9H9V4
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF122
SuperfamilyQ9H9V4
AlphaFold pdb e-kbQ9H9V4   
Human Protein Atlas [tissue]ENSG00000133874-RNF122 [tissue]
HPRD11498
Protein Interaction databases
DIP (DOE-UCLA)Q9H9V4
IntAct (EBI)Q9H9V4
BioGRIDRNF122
STRING (EMBL)RNF122
ZODIACRNF122
Ontologies - Pathways
QuickGOQ9H9V4
Ontology : AmiGOprotein binding  cytoplasm  endoplasmic reticulum  Golgi apparatus  negative regulation of mitochondrial membrane potential  endomembrane system  integral component of membrane  positive regulation of apoptotic process  proteasome-mediated ubiquitin-dependent protein catabolic process  metal ion binding  protein autoubiquitination  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein binding  cytoplasm  endoplasmic reticulum  Golgi apparatus  negative regulation of mitochondrial membrane potential  endomembrane system  integral component of membrane  positive regulation of apoptotic process  proteasome-mediated ubiquitin-dependent protein catabolic process  metal ion binding  protein autoubiquitination  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
NDEx NetworkRNF122
Atlas of Cancer Signalling NetworkRNF122
Wikipedia pathwaysRNF122
Orthology - Evolution
OrthoDB79845
GeneTree (enSembl)ENSG00000133874
Phylogenetic Trees/Animal Genes : TreeFamRNF122
Homologs : HomoloGeneRNF122
Homology/Alignments : Family Browser (UCSC)RNF122
Gene fusions - Rearrangements
Fusion : MitelmanRNF122::NEGR1 [8p12/1p31.1]  
Fusion : QuiverRNF122
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF122 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF122
dbVarRNF122
ClinVarRNF122
MonarchRNF122
1000_GenomesRNF122 
Exome Variant ServerRNF122
GNOMAD BrowserENSG00000133874
Varsome BrowserRNF122
ACMGRNF122 variants
VarityQ9H9V4
Genomic Variants (DGV)RNF122 [DGVbeta]
DECIPHERRNF122 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF122 
Mutations
ICGC Data PortalRNF122 
TCGA Data PortalRNF122 
Broad Tumor PortalRNF122
OASIS PortalRNF122 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF122  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNF122
Mutations and Diseases : HGMDRNF122
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRNF122
DgiDB (Drug Gene Interaction Database)RNF122
DoCM (Curated mutations)RNF122
CIViC (Clinical Interpretations of Variants in Cancer)RNF122
Cancer3DRNF122
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRNF122
MedgenRNF122
Genetic Testing Registry RNF122
NextProtQ9H9V4 [Medical]
GENETestsRNF122
Target ValidationRNF122
Huge Navigator RNF122 [HugePedia]
ClinGenRNF122
Clinical trials, drugs, therapy
MyCancerGenomeRNF122
Protein Interactions : CTDRNF122
Pharm GKB GenePA134892945
PharosQ9H9V4
Clinical trialRNF122
Miscellaneous
canSAR (ICR)RNF122
HarmonizomeRNF122
ARCHS4RNF122
DataMed IndexRNF122
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRNF122
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:31:25 CET 2022

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