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RNF123 (ring finger protein 123)

Identity

Alias_symbol (synonym)FLJ12565
KPC1
Other aliasFP1477
HGNC (Hugo) RNF123
LocusID (NCBI) 63891
Atlas_Id 47473
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49689499 and ends at 49721529 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IFRD2 (3p21.31) / RNF123 (3p21.31)RNF123 (3p21.31) / EEF1A1 (6q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF123   21148
Cards
Entrez_Gene (NCBI)RNF123  63891  ring finger protein 123
AliasesFP1477; KPC1
GeneCards (Weizmann)RNF123
Ensembl hg19 (Hinxton)ENSG00000164068 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164068 [Gene_View]  chr3:49689499-49721529 [Contig_View]  RNF123 [Vega]
ICGC DataPortalENSG00000164068
TCGA cBioPortalRNF123
AceView (NCBI)RNF123
Genatlas (Paris)RNF123
WikiGenes63891
SOURCE (Princeton)RNF123
Genetics Home Reference (NIH)RNF123
Genomic and cartography
GoldenPath hg38 (UCSC)RNF123  -     chr3:49689499-49721529 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF123  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblRNF123 - 3p21.31 [CytoView hg19]  RNF123 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIRNF123 [Mapview hg19]  RNF123 [Mapview hg38]
OMIM614472   
Gene and transcription
Genbank (Entrez)AF370367 AK022627 AK026968 AK090632 AK096353
RefSeq transcript (Entrez)NM_022064
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF123
Cluster EST : UnigeneHs.553723 [ NCBI ]
CGAP (NCI)Hs.553723
Alternative Splicing GalleryENSG00000164068
Gene ExpressionRNF123 [ NCBI-GEO ]   RNF123 [ EBI - ARRAY_EXPRESS ]   RNF123 [ SEEK ]   RNF123 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF123 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63891
GTEX Portal (Tissue expression)RNF123
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XPI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XPI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XPI4
Splice isoforms : SwissVarQ5XPI4
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ5XPI4
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    ConA-like_dom    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)RNF123
DMDM Disease mutations63891
Blocks (Seattle)RNF123
PDB (SRS)2MA6   
PDB (PDBSum)2MA6   
PDB (IMB)2MA6   
PDB (RSDB)2MA6   
Structural Biology KnowledgeBase2MA6   
SCOP (Structural Classification of Proteins)2MA6   
CATH (Classification of proteins structures)2MA6   
SuperfamilyQ5XPI4
Human Protein AtlasENSG00000164068
Peptide AtlasQ5XPI4
HPRD11499
IPIIPI00335085   IPI00783374   IPI00924541   IPI00924757   IPI00927584   IPI00927802   IPI00927110   IPI00927304   
Protein Interaction databases
DIP (DOE-UCLA)Q5XPI4
IntAct (EBI)Q5XPI4
FunCoupENSG00000164068
BioGRIDRNF123
STRING (EMBL)RNF123
ZODIACRNF123
Ontologies - Pathways
QuickGOQ5XPI4
Ontology : AmiGOcytoplasm  cytosol  cytosol  zinc ion binding  protein ubiquitination  protein deubiquitination  transferase activity  
Ontology : EGO-EBIcytoplasm  cytosol  cytosol  zinc ion binding  protein ubiquitination  protein deubiquitination  transferase activity  
NDEx NetworkRNF123
Atlas of Cancer Signalling NetworkRNF123
Wikipedia pathwaysRNF123
Orthology - Evolution
OrthoDB63891
GeneTree (enSembl)ENSG00000164068
Phylogenetic Trees/Animal Genes : TreeFamRNF123
HOVERGENQ5XPI4
HOGENOMQ5XPI4
Homologs : HomoloGeneRNF123
Homology/Alignments : Family Browser (UCSC)RNF123
Gene fusions - Rearrangements
Fusion Cancer (Beijing)RNF123 [3p21.31]  -  EEF1A1 [6q13]  [FUSC001383]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF123 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF123
dbVarRNF123
ClinVarRNF123
1000_GenomesRNF123 
Exome Variant ServerRNF123
ExAC (Exome Aggregation Consortium)RNF123 (select the gene name)
Genetic variants : HAPMAP63891
Genomic Variants (DGV)RNF123 [DGVbeta]
DECIPHERRNF123 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF123 
Mutations
ICGC Data PortalRNF123 
TCGA Data PortalRNF123 
Broad Tumor PortalRNF123
OASIS PortalRNF123 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF123  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF123
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF123
DgiDB (Drug Gene Interaction Database)RNF123
DoCM (Curated mutations)RNF123 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF123 (select a term)
intoGenRNF123
Cancer3DRNF123(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614472   
Orphanet
MedgenRNF123
Genetic Testing Registry RNF123
NextProtQ5XPI4 [Medical]
TSGene63891
GENETestsRNF123
Target ValidationRNF123
Huge Navigator RNF123 [HugePedia]
snp3D : Map Gene to Disease63891
BioCentury BCIQRNF123
ClinGenRNF123
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63891
Chemical/Pharm GKB GenePA134916827
Clinical trialRNF123
Miscellaneous
canSAR (ICR)RNF123 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF123
EVEXRNF123
GoPubMedRNF123
iHOPRNF123
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:57 CEST 2017

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