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RNF13 (ring finger protein 13)

Identity

Alias_symbol (synonym)RZF
Other alias
HGNC (Hugo) RNF13
LocusID (NCBI) 11342
Atlas_Id 46675
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 149812688 and ends at 149962138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POU2F1 (1q24.2) / RNF13 (3q25.1)RNF13 (3q25.1) / ATP8A2 (13q12.13)RNF13 (3q25.1) / LIMCH1 (4p13)
RNF13 (3q25.1) / TM4SF4 (3q25.1)SMC3 (10q25.2) / RNF13 (3q25.1)RNF13 3q25.1 / ATP8A2 13q12.13
RNF13 3q25.1 / TM4SF4 3q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF13   10057
Cards
Entrez_Gene (NCBI)RNF13  11342  ring finger protein 13
AliasesRZF
GeneCards (Weizmann)RNF13
Ensembl hg19 (Hinxton)ENSG00000082996 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000082996 [Gene_View]  chr3:149812688-149962138 [Contig_View]  RNF13 [Vega]
ICGC DataPortalENSG00000082996
TCGA cBioPortalRNF13
AceView (NCBI)RNF13
Genatlas (Paris)RNF13
WikiGenes11342
SOURCE (Princeton)RNF13
Genetics Home Reference (NIH)RNF13
Genomic and cartography
GoldenPath hg38 (UCSC)RNF13  -     chr3:149812688-149962138 +  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF13  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblRNF13 - 3q25.1 [CytoView hg19]  RNF13 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBIRNF13 [Mapview hg19]  RNF13 [Mapview hg38]
OMIM609247   
Gene and transcription
Genbank (Entrez)AF037204 AF070558 AK090638 AK090771 AK313304
RefSeq transcript (Entrez)NM_007282 NM_183381 NM_183382 NM_183383 NM_183384
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF13
Cluster EST : UnigeneHs.12333 [ NCBI ]
CGAP (NCI)Hs.12333
Alternative Splicing GalleryENSG00000082996
Gene ExpressionRNF13 [ NCBI-GEO ]   RNF13 [ EBI - ARRAY_EXPRESS ]   RNF13 [ SEEK ]   RNF13 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11342
GTEX Portal (Tissue expression)RNF13
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43567   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43567  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43567
Splice isoforms : SwissVarO43567
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusO43567
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)PA_domain    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam02225    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF13
DMDM Disease mutations11342
Blocks (Seattle)RNF13
SuperfamilyO43567
Human Protein AtlasENSG00000082996
Peptide AtlasO43567
HPRD11503
IPIIPI00151036   IPI00947440   IPI00373832   IPI00373830   IPI00980592   IPI00976014   IPI00946619   IPI00945300   IPI00946736   IPI00945549   IPI00978141   IPI00879883   IPI00947174   IPI00946275   IPI00795246   
Protein Interaction databases
DIP (DOE-UCLA)O43567
IntAct (EBI)O43567
FunCoupENSG00000082996
BioGRIDRNF13
STRING (EMBL)RNF13
ZODIACRNF13
Ontologies - Pathways
QuickGOO43567
Ontology : AmiGOGolgi membrane  ubiquitin-protein transferase activity  protein binding  nuclear inner membrane  nucleoplasm  lysosome  lysosomal membrane  lysosomal membrane  endoplasmic reticulum membrane  cytosol  zinc ion binding  integral component of membrane  late endosome membrane  intracellular membrane-bounded organelle  protein autoubiquitination  ubiquitin protein ligase activity  
Ontology : EGO-EBIGolgi membrane  ubiquitin-protein transferase activity  protein binding  nuclear inner membrane  nucleoplasm  lysosome  lysosomal membrane  lysosomal membrane  endoplasmic reticulum membrane  cytosol  zinc ion binding  integral component of membrane  late endosome membrane  intracellular membrane-bounded organelle  protein autoubiquitination  ubiquitin protein ligase activity  
NDEx NetworkRNF13
Atlas of Cancer Signalling NetworkRNF13
Wikipedia pathwaysRNF13
Orthology - Evolution
OrthoDB11342
GeneTree (enSembl)ENSG00000082996
Phylogenetic Trees/Animal Genes : TreeFamRNF13
HOVERGENO43567
HOGENOMO43567
Homologs : HomoloGeneRNF13
Homology/Alignments : Family Browser (UCSC)RNF13
Gene fusions - Rearrangements
Fusion : MitelmanRNF13/ATP8A2 [3q25.1/13q12.13]  
Fusion : MitelmanRNF13/TM4SF4 [3q25.1/3q25.1]  [t(3;3)(q25;q25)]  
Fusion: TCGARNF13 3q25.1 ATP8A2 13q12.13 BRCA
Fusion: TCGARNF13 3q25.1 TM4SF4 3q25.1 BRCA OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF13
dbVarRNF13
ClinVarRNF13
1000_GenomesRNF13 
Exome Variant ServerRNF13
ExAC (Exome Aggregation Consortium)RNF13 (select the gene name)
Genetic variants : HAPMAP11342
Genomic Variants (DGV)RNF13 [DGVbeta]
DECIPHERRNF13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF13 
Mutations
ICGC Data PortalRNF13 
TCGA Data PortalRNF13 
Broad Tumor PortalRNF13
OASIS PortalRNF13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF13
DgiDB (Drug Gene Interaction Database)RNF13
DoCM (Curated mutations)RNF13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF13 (select a term)
intoGenRNF13
Cancer3DRNF13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609247   
Orphanet
MedgenRNF13
Genetic Testing Registry RNF13
NextProtO43567 [Medical]
TSGene11342
GENETestsRNF13
Target ValidationRNF13
Huge Navigator RNF13 [HugePedia]
snp3D : Map Gene to Disease11342
BioCentury BCIQRNF13
ClinGenRNF13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11342
Chemical/Pharm GKB GenePA34422
Clinical trialRNF13
Miscellaneous
canSAR (ICR)RNF13 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF13
EVEXRNF13
GoPubMedRNF13
iHOPRNF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:53:28 CEST 2017

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