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RNF130 (ring finger protein 130)

Identity

Other namesG1RZFP
GOLIATH
GP
HGNC (Hugo) RNF130
LocusID (NCBI) 55819
Location 5q35.3
Location_base_pair Starts at 179382474 and ends at 179499109 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNF130   18280
Entrez_Gene (NCBI)RNF130  55819  ring finger protein 130
Cards
GeneCards (Weizmann)RNF130
Ensembl (Hinxton)ENSG00000113269 [Gene_View]  chr5:179382474-179499109 [Contig_View]  RNF130 [Vega]
AceView (NCBI)RNF130
Genatlas (Paris)RNF130
SOURCE (Stanford)NM_018434
Genomic and cartography
GoldenPath (UCSC)RNF130  -  5q35.3   chr5:179382474-179499109 -  5q35.3   [Description]    (hg19-Feb_2009)
EnsemblRNF130 - 5q35.3 [CytoView]
Mapping of homologs : NCBIRNF130 [Mapview]
Gene and transcription
Genbank (Entrez)AB209800 AF155650 AK313089 AL515761 AY083998
RefSeq transcript (SRS)NM_018434
RefSeq transcript (Entrez)NM_018434
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NT_023133 NW_001838967 NW_004078025
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_023133 NW_001838967 NW_004078025
Consensus coding sequences : CCDS (NCBI)RNF130
Cluster EST : UnigeneHs.484363 [ SRS ] Hs.484363 [ NCBI ]
CGAP (NCI)Hs.484363
Alternative Splicing : Fast-db (Paris)GSHG0025338
Alternative Splicing GalleryENSG00000113269
Gene ExpressionRNF130 [ NCBI-GEO ]   RNF130 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XS8 (SRS) Q86XS8 (Uniprot)
NextProtQ86XS8
With graphics : InterProQ86XS8
Splice isoforms : SwissVarQ86XS8(Swissvar)
Domaine pattern : Prosite (SRS)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)Protease-assoc_domain    Znf_RING    Znf_RING/FYVE/PHD   
Domains : Interpro (EBI)Protease-assoc_domain    Znf_RING    Znf_RING/FYVE/PHD   
Related proteins : CluSTrQ86XS8
Domain families : Pfam (SRS)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (Sanger)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam02225    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
DMDM55819
Blocks (Seattle)Q86XS8
Human Protein AtlasENSG00000113269
HPRD11504
IPIIPI00183643   IPI00978495   IPI00973247   IPI00982148   IPI00979998   
Protein Interaction databases
DIP (DOE-UCLA)Q86XS8
IntAct (EBI)Q86XS8
FunCoupENSG00000113269
REACTOMERNF130
Protein Interaction Database55819
BioGRIDRNF130
InParanoidQ86XS8
Interologous Interaction database Q86XS8
IntegromeDBRNF130
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RNF130
SNP (GeneSNP Utah)RNF130
SNP : HGBaseRNF130
Genetic variants : HAPMAPRNF130
Somatic Mutations in Cancer : COSMICRNF130 
CONAN: Copy Number AnalysisRNF130 
Mutations and Diseases : HGMDRNF130
OMIM
GENETests
Disease Genetic AssociationRNF130
Huge Navigator RNF130 [HugePedia]  RNF130 [HugeCancerGEM]
Genomic VariantsRNF130  RNF130 [DGVbeta]
snp3D : Map Gene to Disease55819
General knowledge
Homologs : HomoloGeneRNF130
Homology/Alignments : Family Browser (UCSC)RNF130
Phylogenetic Trees/Animal Genes : TreeFamRNF130
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.- [ Enzyme-SRS ]   6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Chemical/Protein Interactions : CTD55819
Chemical/Pharm GKB GenePA134871556
Clinical trialRNF130
Cancer Resource (Charite)ENSG00000113269
Ontology : AmiGOubiquitin-protein ligase activity  nucleus  cytoplasm  apoptotic process  zinc ion binding  programmed cell death  integral to membrane  metal ion binding  
Ontology : EGO-EBIubiquitin-protein ligase activity  nucleus  cytoplasm  apoptotic process  zinc ion binding  programmed cell death  integral to membrane  metal ion binding  
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
PubGeneRNF130
iHOPRNF130
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:38:00 CEST 2013
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