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RNF130 (ring finger protein 130)

Identity

Other namesG1RZFP
GOLIATH
GP
HGNC (Hugo) RNF130
LocusID (NCBI) 55819
Location 5q35.3
Location_base_pair Starts at 179382067 and ends at 179499118 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNF130   18280
Cards
Entrez_Gene (NCBI)RNF130  55819  ring finger protein 130
GeneCards (Weizmann)RNF130
Ensembl hg19 (Hinxton)ENSG00000113269 [Gene_View]  chr5:179382067-179499118 [Contig_View]  RNF130 [Vega]
Ensembl hg38 (Hinxton)ENSG00000113269 [Gene_View]  chr5:179382067-179499118 [Contig_View]  RNF130 [Vega]
ICGC DataPortalENSG00000113269
cBioPortalRNF130
AceView (NCBI)RNF130
Genatlas (Paris)RNF130
WikiGenes55819
SOURCE (Princeton)RNF130
Genomic and cartography
GoldenPath hg19 (UCSC)RNF130  -     chr5:179382067-179499118 -  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF130  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblRNF130 - 5q35.3 [CytoView hg19]  RNF130 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIRNF130 [Mapview hg19]  RNF130 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA339219 AB209800 AF155650 AK313089 AL515761
RefSeq transcript (Entrez)NM_001280801 NM_018434
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_023133 NW_001838967 NW_004929325
Consensus coding sequences : CCDS (NCBI)RNF130
Cluster EST : UnigeneHs.484363 [ NCBI ]
CGAP (NCI)Hs.484363
Alternative Splicing : Fast-db (Paris)GSHG0025338
Alternative Splicing GalleryENSG00000113269
Gene ExpressionRNF130 [ NCBI-GEO ]     RNF130 [ SEEK ]   RNF130 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XS8 (Uniprot)
NextProtQ86XS8  [Medical]
With graphics : InterProQ86XS8
Splice isoforms : SwissVarQ86XS8 (Swissvar)
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Protease-assoc_domain    Znf_RING    Znf_RING/FYVE/PHD   
Related proteins : CluSTrQ86XS8
Domain families : Pfam (Sanger)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam02225    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
DMDM Disease mutations55819
Blocks (Seattle)Q86XS8
Human Protein AtlasENSG00000113269
Peptide AtlasQ86XS8
HPRD11504
IPIIPI00183643   IPI00978495   IPI00973247   IPI00982148   IPI00979998   
Protein Interaction databases
DIP (DOE-UCLA)Q86XS8
IntAct (EBI)Q86XS8
FunCoupENSG00000113269
BioGRIDRNF130
IntegromeDBRNF130
STRING (EMBL)RNF130
Ontologies - Pathways
QuickGOQ86XS8
Ontology : AmiGOubiquitin-protein transferase activity  nucleus  cytoplasm  apoptotic process  zinc ion binding  programmed cell death  integral component of membrane  protein ubiquitination  ligase activity  
Ontology : EGO-EBIubiquitin-protein transferase activity  nucleus  cytoplasm  apoptotic process  zinc ion binding  programmed cell death  integral component of membrane  protein ubiquitination  ligase activity  
Protein Interaction DatabaseRNF130
DoCM (Curated mutations)RNF130
Wikipedia pathwaysRNF130
Gene fusion - rearrangements
Rearrangement : COSMICRNF130 [5q35.3]  -  BRAF [7q34]
Polymorphisms : SNP, variants
NCBI Variation ViewerRNF130 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF130
dbVarRNF130
ClinVarRNF130
1000_GenomesRNF130 
Exome Variant ServerRNF130
SNP (GeneSNP Utah)RNF130
SNP : HGBaseRNF130
Genetic variants : HAPMAPRNF130
Genomic VariantsRNF130  RNF130 [DGVbeta]
Mutations
ICGC Data PortalENSG00000113269 
Somatic Mutations in Cancer : COSMICRNF130 
CONAN: Copy Number AnalysisRNF130 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:179382067-179499118
Mutations and Diseases : HGMDRNF130
OMIM
MedgenRNF130
NextProtQ86XS8 [Medical]
GENETestsRNF130
Disease Genetic AssociationRNF130
Huge Navigator RNF130 [HugePedia]  RNF130 [HugeCancerGEM]
snp3D : Map Gene to Disease55819
DGIdb (Drug Gene Interaction db)RNF130
General knowledge
Homologs : HomoloGeneRNF130
Homology/Alignments : Family Browser (UCSC)RNF130
Phylogenetic Trees/Animal Genes : TreeFamRNF130
Chemical/Protein Interactions : CTD55819
Chemical/Pharm GKB GenePA134871556
Clinical trialRNF130
Cancer Resource (Charite)ENSG00000113269
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
CoreMineRNF130
GoPubMedRNF130
iHOPRNF130
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:11:54 CET 2014

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