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RNF133 (ring finger protein 133)

Identity

Other alias-
HGNC (Hugo) RNF133
LocusID (NCBI) 168433
Atlas_Id 46731
Location 7q31.32  [Link to chromosome band 7q31]
Location_base_pair Starts at 122697712 and ends at 122699154 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF133   21154
Cards
Entrez_Gene (NCBI)RNF133  168433  ring finger protein 133
Aliases
GeneCards (Weizmann)RNF133
Ensembl hg19 (Hinxton)ENSG00000188050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188050 [Gene_View]  chr7:122697712-122699154 [Contig_View]  RNF133 [Vega]
ICGC DataPortalENSG00000188050
TCGA cBioPortalRNF133
AceView (NCBI)RNF133
Genatlas (Paris)RNF133
WikiGenes168433
SOURCE (Princeton)RNF133
Genetics Home Reference (NIH)RNF133
Genomic and cartography
GoldenPath hg38 (UCSC)RNF133  -     chr7:122697712-122699154 -  7q31.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF133  -     7q31.32   [Description]    (hg19-Feb_2009)
EnsemblRNF133 - 7q31.32 [CytoView hg19]  RNF133 - 7q31.32 [CytoView hg38]
Mapping of homologs : NCBIRNF133 [Mapview hg19]  RNF133 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF447589 AK098524 BC022038 GQ129354 GQ129355
RefSeq transcript (Entrez)NM_139175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF133
Cluster EST : UnigeneHs.126730 [ NCBI ]
CGAP (NCI)Hs.126730
Alternative Splicing GalleryENSG00000188050
Gene ExpressionRNF133 [ NCBI-GEO ]   RNF133 [ EBI - ARRAY_EXPRESS ]   RNF133 [ SEEK ]   RNF133 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF133 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168433
GTEX Portal (Tissue expression)RNF133
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVZ7
Splice isoforms : SwissVarQ8WVZ7
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8WVZ7
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)PA_domain    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam02225    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF133
DMDM Disease mutations168433
Blocks (Seattle)RNF133
SuperfamilyQ8WVZ7
Human Protein AtlasENSG00000188050
Peptide AtlasQ8WVZ7
HPRD11505
IPIIPI00549481   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVZ7
IntAct (EBI)Q8WVZ7
FunCoupENSG00000188050
BioGRIDRNF133
STRING (EMBL)RNF133
ZODIACRNF133
Ontologies - Pathways
QuickGOQ8WVZ7
Ontology : AmiGOendoplasmic reticulum membrane  zinc ion binding  integral component of membrane  transferase activity  protein autoubiquitination  
Ontology : EGO-EBIendoplasmic reticulum membrane  zinc ion binding  integral component of membrane  transferase activity  protein autoubiquitination  
NDEx NetworkRNF133
Atlas of Cancer Signalling NetworkRNF133
Wikipedia pathwaysRNF133
Orthology - Evolution
OrthoDB168433
GeneTree (enSembl)ENSG00000188050
Phylogenetic Trees/Animal Genes : TreeFamRNF133
HOVERGENQ8WVZ7
HOGENOMQ8WVZ7
Homologs : HomoloGeneRNF133
Homology/Alignments : Family Browser (UCSC)RNF133
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF133 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF133
dbVarRNF133
ClinVarRNF133
1000_GenomesRNF133 
Exome Variant ServerRNF133
ExAC (Exome Aggregation Consortium)RNF133 (select the gene name)
Genetic variants : HAPMAP168433
Genomic Variants (DGV)RNF133 [DGVbeta]
DECIPHERRNF133 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF133 
Mutations
ICGC Data PortalRNF133 
TCGA Data PortalRNF133 
Broad Tumor PortalRNF133
OASIS PortalRNF133 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF133  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF133
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF133
DgiDB (Drug Gene Interaction Database)RNF133
DoCM (Curated mutations)RNF133 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF133 (select a term)
intoGenRNF133
Cancer3DRNF133(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF133
Genetic Testing Registry RNF133
NextProtQ8WVZ7 [Medical]
TSGene168433
GENETestsRNF133
Target ValidationRNF133
Huge Navigator RNF133 [HugePedia]
snp3D : Map Gene to Disease168433
BioCentury BCIQRNF133
ClinGenRNF133
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168433
Chemical/Pharm GKB GenePA134991267
Clinical trialRNF133
Miscellaneous
canSAR (ICR)RNF133 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF133
EVEXRNF133
GoPubMedRNF133
iHOPRNF133
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:05:58 CEST 2017

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