Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RNF14 (ring finger protein 14)

Identity

Alias_symbol (synonym)ARA54
HFB30
TRIAD2
Other aliasHRIHFB2038
HGNC (Hugo) RNF14
LocusID (NCBI) 9604
Atlas_Id 42130
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141966837 and ends at 141990291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDC42 (1p36.12) / RNF14 (5q31.3)LOC100507412 (-) / RNF14 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF14   10058
Cards
Entrez_Gene (NCBI)RNF14  9604  ring finger protein 14
AliasesARA54; HFB30; HRIHFB2038; TRIAD2
GeneCards (Weizmann)RNF14
Ensembl hg19 (Hinxton)ENSG00000013561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000013561 [Gene_View]  chr5:141966837-141990291 [Contig_View]  RNF14 [Vega]
ICGC DataPortalENSG00000013561
TCGA cBioPortalRNF14
AceView (NCBI)RNF14
Genatlas (Paris)RNF14
WikiGenes9604
SOURCE (Princeton)RNF14
Genetics Home Reference (NIH)RNF14
Genomic and cartography
GoldenPath hg38 (UCSC)RNF14  -     chr5:141966837-141990291 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF14  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblRNF14 - 5q31.3 [CytoView hg19]  RNF14 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIRNF14 [Mapview hg19]  RNF14 [Mapview hg38]
OMIM605675   
Gene and transcription
Genbank (Entrez)AA418072 AB015333 AB022663 AF060544 AK023698
RefSeq transcript (Entrez)NM_001201365 NM_004290 NM_183398 NM_183399 NM_183400 NM_183401
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF14
Cluster EST : UnigeneHs.483616 [ NCBI ]
CGAP (NCI)Hs.483616
Alternative Splicing GalleryENSG00000013561
Gene ExpressionRNF14 [ NCBI-GEO ]   RNF14 [ EBI - ARRAY_EXPRESS ]   RNF14 [ SEEK ]   RNF14 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9604
GTEX Portal (Tissue expression)RNF14
Human Protein AtlasENSG00000013561-RNF14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBS8
Splice isoforms : SwissVarQ9UBS8
PhosPhoSitePlusQ9UBS8
Domaine pattern : Prosite (Expaxy)RWD (PS50908)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)E3_UB_ligase_RBR    IBR_dom    RWD-domain    UBQ-conjugating_enzyme/RWD    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)IBR (PF01485)    RWD (PF05773)   
Domain families : Pfam (NCBI)pfam01485    pfam05773   
Domain families : Smart (EMBL)IBR (SM00647)  RWD (SM00591)  
Conserved Domain (NCBI)RNF14
DMDM Disease mutations9604
Blocks (Seattle)RNF14
SuperfamilyQ9UBS8
Human Protein Atlas [tissue]ENSG00000013561-RNF14 [tissue]
Peptide AtlasQ9UBS8
HPRD05745
IPIIPI00003606   IPI00921982   IPI00922204   IPI00374140   IPI00967686   IPI00964831   IPI00964512   IPI00973063   IPI00967970   IPI00963906   IPI00964522   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBS8
IntAct (EBI)Q9UBS8
FunCoupENSG00000013561
BioGRIDRNF14
STRING (EMBL)RNF14
ZODIACRNF14
Ontologies - Pathways
QuickGOQ9UBS8
Ontology : AmiGOubiquitin ligase complex  protein polyubiquitination  transcription coactivator activity  transcription coactivator activity  protein binding  nucleus  cytoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  signal transduction  zinc ion binding  protein ubiquitination  ubiquitin-like protein transferase activity  androgen receptor signaling pathway  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  androgen receptor binding  regulation of androgen receptor signaling pathway  ubiquitin protein ligase activity  
Ontology : EGO-EBIubiquitin ligase complex  protein polyubiquitination  transcription coactivator activity  transcription coactivator activity  protein binding  nucleus  cytoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  signal transduction  zinc ion binding  protein ubiquitination  ubiquitin-like protein transferase activity  androgen receptor signaling pathway  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  androgen receptor binding  regulation of androgen receptor signaling pathway  ubiquitin protein ligase activity  
NDEx NetworkRNF14
Atlas of Cancer Signalling NetworkRNF14
Wikipedia pathwaysRNF14
Orthology - Evolution
OrthoDB9604
GeneTree (enSembl)ENSG00000013561
Phylogenetic Trees/Animal Genes : TreeFamRNF14
HOVERGENQ9UBS8
HOGENOMQ9UBS8
Homologs : HomoloGeneRNF14
Homology/Alignments : Family Browser (UCSC)RNF14
Gene fusions - Rearrangements
Tumor Fusion PortalRNF14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF14
dbVarRNF14
ClinVarRNF14
1000_GenomesRNF14 
Exome Variant ServerRNF14
ExAC (Exome Aggregation Consortium)ENSG00000013561
GNOMAD BrowserENSG00000013561
Genetic variants : HAPMAP9604
Genomic Variants (DGV)RNF14 [DGVbeta]
DECIPHERRNF14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF14 
Mutations
ICGC Data PortalRNF14 
TCGA Data PortalRNF14 
Broad Tumor PortalRNF14
OASIS PortalRNF14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF14
DgiDB (Drug Gene Interaction Database)RNF14
DoCM (Curated mutations)RNF14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF14 (select a term)
intoGenRNF14
Cancer3DRNF14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605675   
Orphanet
DisGeNETRNF14
MedgenRNF14
Genetic Testing Registry RNF14
NextProtQ9UBS8 [Medical]
TSGene9604
GENETestsRNF14
Target ValidationRNF14
Huge Navigator RNF14 [HugePedia]
snp3D : Map Gene to Disease9604
BioCentury BCIQRNF14
ClinGenRNF14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9604
Chemical/Pharm GKB GenePA34423
Clinical trialRNF14
Miscellaneous
canSAR (ICR)RNF14 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF14
EVEXRNF14
GoPubMedRNF14
iHOPRNF14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:32:37 CET 2017

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