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RNF141 (ring finger protein 141)

Identity

Alias_symbol (synonym)ZFP26
ZNF230
Other alias
HGNC (Hugo) RNF141
LocusID (NCBI) 50862
Atlas_Id 47294
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 10511678 and ends at 10541227 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PFAS (17p13.1) / RNF141 (11p15.4)PNPO (17q21.32) / RNF141 (11p15.4)RNF141 (11p15.4) / KRT5 (12q13.13)
RNF141 (11p15.4) / RNF141 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF141   21159
Cards
Entrez_Gene (NCBI)RNF141  50862  ring finger protein 141
AliasesZFP26; ZNF230
GeneCards (Weizmann)RNF141
Ensembl hg19 (Hinxton)ENSG00000110315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110315 [Gene_View]  chr11:10511678-10541227 [Contig_View]  RNF141 [Vega]
ICGC DataPortalENSG00000110315
TCGA cBioPortalRNF141
AceView (NCBI)RNF141
Genatlas (Paris)RNF141
WikiGenes50862
SOURCE (Princeton)RNF141
Genetics Home Reference (NIH)RNF141
Genomic and cartography
GoldenPath hg38 (UCSC)RNF141  -     chr11:10511678-10541227 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF141  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblRNF141 - 11p15.4 [CytoView hg19]  RNF141 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIRNF141 [Mapview hg19]  RNF141 [Mapview hg38]
OMIM616641   
Gene and transcription
Genbank (Entrez)AF214680 AI356880 AI912940 AK289764 AK309367
RefSeq transcript (Entrez)NM_016422
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF141
Cluster EST : UnigeneHs.712894 [ NCBI ]
CGAP (NCI)Hs.712894
Alternative Splicing GalleryENSG00000110315
Gene ExpressionRNF141 [ NCBI-GEO ]   RNF141 [ EBI - ARRAY_EXPRESS ]   RNF141 [ SEEK ]   RNF141 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF141 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50862
GTEX Portal (Tissue expression)RNF141
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVD5
Splice isoforms : SwissVarQ8WVD5
PhosPhoSitePlusQ8WVD5
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF141
DMDM Disease mutations50862
Blocks (Seattle)RNF141
PDB (SRS)2ECN   
PDB (PDBSum)2ECN   
PDB (IMB)2ECN   
PDB (RSDB)2ECN   
Structural Biology KnowledgeBase2ECN   
SCOP (Structural Classification of Proteins)2ECN   
CATH (Classification of proteins structures)2ECN   
SuperfamilyQ8WVD5
Human Protein AtlasENSG00000110315
Peptide AtlasQ8WVD5
HPRD11509
IPIIPI00152564   IPI00977188   IPI00977458   IPI00980785   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVD5
IntAct (EBI)Q8WVD5
FunCoupENSG00000110315
BioGRIDRNF141
STRING (EMBL)RNF141
ZODIACRNF141
Ontologies - Pathways
QuickGOQ8WVD5
Ontology : AmiGODNA binding  ubiquitin-protein transferase activity  regulation of transcription, DNA-templated  zinc ion binding  membrane  protein autoubiquitination  
Ontology : EGO-EBIDNA binding  ubiquitin-protein transferase activity  regulation of transcription, DNA-templated  zinc ion binding  membrane  protein autoubiquitination  
NDEx NetworkRNF141
Atlas of Cancer Signalling NetworkRNF141
Wikipedia pathwaysRNF141
Orthology - Evolution
OrthoDB50862
GeneTree (enSembl)ENSG00000110315
Phylogenetic Trees/Animal Genes : TreeFamRNF141
HOVERGENQ8WVD5
HOGENOMQ8WVD5
Homologs : HomoloGeneRNF141
Homology/Alignments : Family Browser (UCSC)RNF141
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF141 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF141
dbVarRNF141
ClinVarRNF141
1000_GenomesRNF141 
Exome Variant ServerRNF141
ExAC (Exome Aggregation Consortium)RNF141 (select the gene name)
Genetic variants : HAPMAP50862
Genomic Variants (DGV)RNF141 [DGVbeta]
DECIPHERRNF141 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF141 
Mutations
ICGC Data PortalRNF141 
TCGA Data PortalRNF141 
Broad Tumor PortalRNF141
OASIS PortalRNF141 [ Somatic mutations - Copy Numbeb]¼/TD>
Somatic Mutations in Cancer : COSMICRNF141  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF141
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF141
DgiDB (Drug Gene Interaction Database)RNF141
DoCM (Curated mutations)RNF141 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF141 (select a term)
intoGenRNF141
Cancer3DRNF141(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616641   
Orphanet
MedgenRNF141
Genetic Testing Registry RNF141
NextProtQ8WVD5 [Medical]
TSGene50862
GENETestsRNF141
Target ValidationRNF141
Huge Navigator RNF141 [HugePedia]
snp3D : Map Gene to Disease50862
BioCentury BCIQRNF141
ClinGenRNF141
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50862
Chemical/Pharm GKB GenePA134981805
Clinical trialRNF141
Miscellaneous
canSAR (ICR)RNF141 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF141
EVEXRNF141
GoPubMedRNF141
iHOPRNF141
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:29:03 CEST 2017

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