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RNF145 (ring finger protein 145)

Identity

Alias_symbol (synonym)FLJ31951
Other alias-
HGNC (Hugo) RNF145
LocusID (NCBI) 153830
Atlas_Id 72689
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 159157409 and ends at 159210053 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF145 (5q33.3) / MAN1C1 (1p36.11)RNF145 (5q33.3) / RNF145 (5q33.3)SCAF11 (12q12) / RNF145 (5q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF145   20853
Cards
Entrez_Gene (NCBI)RNF145  153830  ring finger protein 145
Aliases
GeneCards (Weizmann)RNF145
Ensembl hg19 (Hinxton)ENSG00000145860 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145860 [Gene_View]  chr5:159157409-159210053 [Contig_View]  RNF145 [Vega]
ICGC DataPortalENSG00000145860
TCGA cBioPortalRNF145
AceView (NCBI)RNF145
Genatlas (Paris)RNF145
WikiGenes153830
SOURCE (Princeton)RNF145
Genetics Home Reference (NIH)RNF145
Genomic and cartography
GoldenPath hg38 (UCSC)RNF145  -     chr5:159157409-159210053 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF145  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblRNF145 - 5q33.3 [CytoView hg19]  RNF145 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIRNF145 [Mapview hg19]  RNF145 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056513 AK075101 AK098802 AK126290 AK292854
RefSeq transcript (Entrez)NM_001199380 NM_001199381 NM_001199382 NM_001199383 NM_144726
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF145
Cluster EST : UnigeneHs.349306 [ NCBI ]
CGAP (NCI)Hs.349306
Alternative Splicing GalleryENSG00000145860
Gene ExpressionRNF145 [ NCBI-GEO ]   RNF145 [ EBI - ARRAY_EXPRESS ]   RNF145 [ SEEK ]   RNF145 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF145 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153830
GTEX Portal (Tissue expression)RNF145
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MT1
Splice isoforms : SwissVarQ96MT1
PhosPhoSitePlusQ96MT1
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)TRC8_N_dom    Znf_RING    Znf_RING-CH    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)TRC8_N (PF13705)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13705    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  RINGv (SM00744)  
Conserved Domain (NCBI)RNF145
DMDM Disease mutations153830
Blocks (Seattle)RNF145
SuperfamilyQ96MT1
Human Protein AtlasENSG00000145860
Peptide AtlasQ96MT1
HPRD08113
IPIIPI00930398   IPI00043360   IPI00975659   IPI00976259   IPI00979590   
Protein Interaction databases
DIP (DOE-UCLA)Q96MT1
IntAct (EBI)Q96MT1
FunCoupENSG00000145860
BioGRIDRNF145
STRING (EMBL)RNF145
ZODIACRNF145
Ontologies - Pathways
QuickGOQ96MT1
Ontology : AmiGOprotein polyubiquitination  zinc ion binding  integral component of membrane  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  zinc ion binding  integral component of membrane  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkRNF145
Atlas of Cancer Signalling NetworkRNF145
Wikipedia pathwaysRNF145
Orthology - Evolution
OrthoDB153830
GeneTree (enSembl)ENSG00000145860
Phylogenetic Trees/Animal Genes : TreeFamRNF145
HOVERGENQ96MT1
HOGENOMQ96MT1
Homologs : HomoloGeneRNF145
Homology/Alignments : Family Browser (UCSC)RNF145
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF145 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF145
dbVarRNF145
ClinVarRNF145
1000_GenomesRNF145 
Exome Variant ServerRNF145
ExAC (Exome Aggregation Consortium)RNF145 (select the gene name)
Genetic variants : HAPMAP153830
Genomic Variants (DGV)RNF145 [DGVbeta]
DECIPHERRNF145 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF145 
Mutations
ICGC Data PortalRNF145 
TCGA Data PortalRNF145 
Broad Tumor PortalRNF145
OASIS PortalRNF145 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF145  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF145
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF145
DgiDB (Drug Gene Interaction Database)RNF145
DoCM (Curated mutations)RNF145 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF145 (select a term)
intoGenRNF145
Cancer3DRNF145(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF145
Genetic Testing Registry RNF145
NextProtQ96MT1 [Medical]
TSGene153830
GENETestsRNF145
Target ValidationRNF145
Huge Navigator RNF145 [HugePedia]
snp3D : Map Gene to Disease153830
BioCentury BCIQRNF145
ClinGenRNF145
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153830
Chemical/Pharm GKB GenePA134876286
Clinical trialRNF145
Miscellaneous
canSAR (ICR)RNF145 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF145
EVEXRNF145
GoPubMedRNF145
iHOPRNF145
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:25 CEST 2017

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