Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNF148 (ring finger protein 148)

Identity

Alias_symbol (synonym)MGC35222
Other alias-
HGNC (Hugo) RNF148
LocusID (NCBI) 378925
Atlas_Id 47004
Location 7q31.32  [Link to chromosome band 7q31]
Location_base_pair Starts at 122701666 and ends at 122702967 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF148   22411
Cards
Entrez_Gene (NCBI)RNF148  378925  ring finger protein 148
Aliases
GeneCards (Weizmann)RNF148
Ensembl hg19 (Hinxton)ENSG00000235631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235631 [Gene_View]  chr7:122701666-122702967 [Contig_View]  RNF148 [Vega]
ICGC DataPortalENSG00000235631
TCGA cBioPortalRNF148
AceView (NCBI)RNF148
Genatlas (Paris)RNF148
WikiGenes378925
SOURCE (Princeton)RNF148
Genetics Home Reference (NIH)RNF148
Genomic and cartography
GoldenPath hg38 (UCSC)RNF148  -     chr7:122701666-122702967 -  7q31.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF148  -     7q31.32   [Description]    (hg19-Feb_2009)
EnsemblRNF148 - 7q31.32 [CytoView hg19]  RNF148 - 7q31.32 [CytoView hg38]
Mapping of homologs : NCBIRNF148 [Mapview hg19]  RNF148 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058116 AK098654 BC029264
RefSeq transcript (Entrez)NM_198085
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF148
Cluster EST : UnigeneHs.675191 [ NCBI ]
CGAP (NCI)Hs.675191
Alternative Splicing GalleryENSG00000235631
Gene ExpressionRNF148 [ NCBI-GEO ]   RNF148 [ EBI - ARRAY_EXPRESS ]   RNF148 [ SEEK ]   RNF148 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF148 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378925
GTEX Portal (Tissue expression)RNF148
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7C7
Splice isoforms : SwissVarQ8N7C7
PhosPhoSitePlusQ8N7C7
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)PA_domain    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam02225    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF148
DMDM Disease mutations378925
Blocks (Seattle)RNF148
SuperfamilyQ8N7C7
Human Protein AtlasENSG00000235631
Peptide AtlasQ8N7C7
HPRD11512
IPIIPI00549513   IPI00926499   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7C7
IntAct (EBI)Q8N7C7
FunCoupENSG00000235631
BioGRIDRNF148
STRING (EMBL)RNF148
ZODIACRNF148
Ontologies - Pathways
QuickGOQ8N7C7
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkRNF148
Atlas of Cancer Signalling NetworkRNF148
Wikipedia pathwaysRNF148
Orthology - Evolution
OrthoDB378925
GeneTree (enSembl)ENSG00000235631
Phylogenetic Trees/Animal Genes : TreeFamRNF148
HOVERGENQ8N7C7
HOGENOMQ8N7C7
Homologs : HomoloGeneRNF148
Homology/Alignments : Family Browser (UCSC)RNF148
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF148 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF148
dbVarRNF148
ClinVarRNF148
1000_GenomesRNF148 
Exome Variant ServerRNF148
ExAC (Exome Aggregation Consortium)RNF148 (select the gene name)
Genetic variants : HAPMAP378925
Genomic Variants (DGV)RNF148 [DGVbeta]
DECIPHERRNF148 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF148 
Mutations
ICGC Data PortalRNF148 
TCGA Data PortalRNF148 
Broad Tumor PortalRNF148
OASIS PortalRNF148 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF148  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF148
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF148
DgiDB (Drug Gene Interaction Database)RNF148
DoCM (Curated mutations)RNF148 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF148 (select a term)
intoGenRNF148
Cancer3DRNF148(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF148
Genetic Testing Registry RNF148
NextProtQ8N7C7 [Medical]
TSGene378925
GENETestsRNF148
Huge Navigator RNF148 [HugePedia]
snp3D : Map Gene to Disease378925
BioCentury BCIQRNF148
ClinGenRNF148
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378925
Chemical/Pharm GKB GenePA134918676
Clinical trialRNF148
Miscellaneous
canSAR (ICR)RNF148 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF148
EVEXRNF148
GoPubMedRNF148
iHOPRNF148
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:35:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.