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RNF150 (ring finger protein 150)

Identity

Alias_symbol (synonym)KIAA1214
Other alias-
HGNC (Hugo) RNF150
LocusID (NCBI) 57484
Atlas_Id 47493
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 141786725 and ends at 142054616 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RNF150 (4q31.21) / TTC29 (4q31.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF150   23138
Cards
Entrez_Gene (NCBI)RNF150  57484  ring finger protein 150
Aliases
GeneCards (Weizmann)RNF150
Ensembl hg19 (Hinxton)ENSG00000170153 [Gene_View]  chr4:141786725-142054616 [Contig_View]  RNF150 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170153 [Gene_View]  chr4:141786725-142054616 [Contig_View]  RNF150 [Vega]
ICGC DataPortalENSG00000170153
TCGA cBioPortalRNF150
AceView (NCBI)RNF150
Genatlas (Paris)RNF150
WikiGenes57484
SOURCE (Princeton)RNF150
Genetics Home Reference (NIH)RNF150
Genomic and cartography
GoldenPath hg19 (UCSC)RNF150  -     chr4:141786725-142054616 -  4q31.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF150  -     4q31.21   [Description]    (hg38-Dec_2013)
EnsemblRNF150 - 4q31.21 [CytoView hg19]  RNF150 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIRNF150 [Mapview hg19]  RNF150 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033040 AK130520 BC101992
RefSeq transcript (Entrez)NM_020724
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)RNF150
Cluster EST : UnigeneHs.659104 [ NCBI ]
CGAP (NCI)Hs.659104
Alternative Splicing GalleryENSG00000170153
Gene ExpressionRNF150 [ NCBI-GEO ]   RNF150 [ EBI - ARRAY_EXPRESS ]   RNF150 [ SEEK ]   RNF150 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF150 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57484
GTEX Portal (Tissue expression)RNF150
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULK6
Splice isoforms : SwissVarQ9ULK6
PhosPhoSitePlusQ9ULK6
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)PA_domain    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam02225    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF150
DMDM Disease mutations57484
Blocks (Seattle)RNF150
SuperfamilyQ9ULK6
Human Protein AtlasENSG00000170153
Peptide AtlasQ9ULK6
HPRD15258
IPIIPI00297277   IPI00830119   IPI00829678   IPI00742907   IPI00964624   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULK6
IntAct (EBI)Q9ULK6
FunCoupENSG00000170153
BioGRIDRNF150
STRING (EMBL)RNF150
ZODIACRNF150
Ontologies - Pathways
QuickGOQ9ULK6
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkRNF150
Atlas of Cancer Signalling NetworkRNF150
Wikipedia pathwaysRNF150
Orthology - Evolution
OrthoDB57484
GeneTree (enSembl)ENSG00000170153
Phylogenetic Trees/Animal Genes : TreeFamRNF150
HOVERGENQ9ULK6
HOGENOMQ9ULK6
Homologs : HomoloGeneRNF150
Homology/Alignments : Family Browser (UCSC)RNF150
Gene fusions - Rearrangements
Fusion : MitelmanRNF150/TTC29 [4q31.21/4q31.22]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF150 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF150
dbVarRNF150
ClinVarRNF150
1000_GenomesRNF150 
Exome Variant ServerRNF150
ExAC (Exome Aggregation Consortium)RNF150 (select the gene name)
Genetic variants : HAPMAP57484
Genomic Variants (DGV)RNF150 [DGVbeta]
DECIPHER (Syndromes)4:141786725-142054616  ENSG00000170153
CONAN: Copy Number AnalysisRNF150 
Mutations
ICGC Data PortalRNF150 
TCGA Data PortalRNF150 
Broad Tumor PortalRNF150
OASIS PortalRNF150 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF150  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF150
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF150
DgiDB (Drug Gene Interaction Database)RNF150
DoCM (Curated mutations)RNF150 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF150 (select a term)
intoGenRNF150
Cancer3DRNF150(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF150
Genetic Testing Registry RNF150
NextProtQ9ULK6 [Medical]
TSGene57484
GENETestsRNF150
Huge Navigator RNF150 [HugePedia]
snp3D : Map Gene to Disease57484
BioCentury BCIQRNF150
ClinGenRNF150
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57484
Chemical/Pharm GKB GenePA134918555
Clinical trialRNF150
Miscellaneous
canSAR (ICR)RNF150 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF150
EVEXRNF150
GoPubMedRNF150
iHOPRNF150
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:39 CEST 2017

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