Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNF152 (ring finger protein 152)

Identity

Alias_symbol (synonym)FLJ39176
Other alias-
HGNC (Hugo) RNF152
LocusID (NCBI) 220441
Atlas_Id 47113
Location 18q21.33  [Link to chromosome band 18q21]
Location_base_pair Starts at 61815071 and ends at 61893071 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF152 (18q21.33) / PIGN (18q21.33)RNF152 18q21.33 / PIGN 18q21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF152   26811
Cards
Entrez_Gene (NCBI)RNF152  220441  ring finger protein 152
Aliases
GeneCards (Weizmann)RNF152
Ensembl hg19 (Hinxton)ENSG00000176641 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176641 [Gene_View]  chr18:61815071-61893071 [Contig_View]  RNF152 [Vega]
ICGC DataPortalENSG00000176641
TCGA cBioPortalRNF152
AceView (NCBI)RNF152
Genatlas (Paris)RNF152
WikiGenes220441
SOURCE (Princeton)RNF152
Genetics Home Reference (NIH)RNF152
Genomic and cartography
GoldenPath hg38 (UCSC)RNF152  -     chr18:61815071-61893071 -  18q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF152  -     18q21.33   [Description]    (hg19-Feb_2009)
EnsemblRNF152 - 18q21.33 [CytoView hg19]  RNF152 - 18q21.33 [CytoView hg38]
Mapping of homologs : NCBIRNF152 [Mapview hg19]  RNF152 [Mapview hg38]
OMIM616512   
Gene and transcription
Genbank (Entrez)AK096495 AK122758 BC071787 BC094004 BC111956
RefSeq transcript (Entrez)NM_173557
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF152
Cluster EST : UnigeneHs.667457 [ NCBI ]
CGAP (NCI)Hs.667457
Alternative Splicing GalleryENSG00000176641
Gene ExpressionRNF152 [ NCBI-GEO ]   RNF152 [ EBI - ARRAY_EXPRESS ]   RNF152 [ SEEK ]   RNF152 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF152 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220441
GTEX Portal (Tissue expression)RNF152
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8N0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8N0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8N0
Splice isoforms : SwissVarQ8N8N0
PhosPhoSitePlusQ8N8N0
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RNF152    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_5 (PF14634)   
Domain families : Pfam (NCBI)pfam14634   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF152
DMDM Disease mutations220441
Blocks (Seattle)RNF152
SuperfamilyQ8N8N0
Human Protein AtlasENSG00000176641
Peptide AtlasQ8N8N0
HPRD11514
IPIIPI00167511   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8N0
IntAct (EBI)Q8N8N0
FunCoupENSG00000176641
BioGRIDRNF152
STRING (EMBL)RNF152
ZODIACRNF152
Ontologies - Pathways
QuickGOQ8N8N0
Ontology : AmiGOubiquitin-protein transferase activity  lysosome  lysosomal membrane  lysosomal membrane  apoptotic process  zinc ion binding  positive regulation of autophagy  protein ubiquitination  small GTPase binding  integral component of organelle membrane  cellular response to amino acid starvation  ubiquitin protein ligase activity  ubiquitin protein ligase activity  protein K63-linked ubiquitination  protein K48-linked ubiquitination  negative regulation of TORC1 signaling  
Ontology : EGO-EBIubiquitin-protein transferase activity  lysosome  lysosomal membrane  lysosomal membrane  apoptotic process  zinc ion binding  positive regulation of autophagy  protein ubiquitination  small GTPase binding  integral component of organelle membrane  cellular response to amino acid starvation  ubiquitin protein ligase activity  ubiquitin protein ligase activity  protein K63-linked ubiquitination  protein K48-linked ubiquitination  negative regulation of TORC1 signaling  
NDEx NetworkRNF152
Atlas of Cancer Signalling NetworkRNF152
Wikipedia pathwaysRNF152
Orthology - Evolution
OrthoDB220441
GeneTree (enSembl)ENSG00000176641
Phylogenetic Trees/Animal Genes : TreeFamRNF152
HOVERGENQ8N8N0
HOGENOMQ8N8N0
Homologs : HomoloGeneRNF152
Homology/Alignments : Family Browser (UCSC)RNF152
Gene fusions - Rearrangements
Fusion : MitelmanRNF152/PIGN [18q21.33/18q21.33]  
Fusion: TCGARNF152 18q21.33 PIGN 18q21.33 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF152 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF152
dbVarRNF152
ClinVarRNF152
1000_GenomesRNF152 
Exome Variant ServerRNF152
ExAC (Exome Aggregation Consortium)RNF152 (select the gene name)
Genetic variants : HAPMAP220441
Genomic Variants (DGV)RNF152 [DGVbeta]
DECIPHERRNF152 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF152 
Mutations
ICGC Data PortalRNF152 
TCGA Data PortalRNF152 
Broad Tumor PortalRNF152
OASIS PortalRNF152 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF152  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF152
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF152
DgiDB (Drug Gene Interaction Database)RNF152
DoCM (Curated mutations)RNF152 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF152 (select a term)
intoGenRNF152
Cancer3DRNF152(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616512   
Orphanet
MedgenRNF152
Genetic Testing Registry RNF152
NextProtQ8N8N0 [Medical]
TSGene220441
GENETestsRNF152
Huge Navigator RNF152 [HugePedia]
snp3D : Map Gene to Disease220441
BioCentury BCIQRNF152
ClinGenRNF152
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220441
Chemical/Pharm GKB GenePA134984811
Clinical trialRNF152
Miscellaneous
canSAR (ICR)RNF152 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF152
EVEXRNF152
GoPubMedRNF152
iHOPRNF152
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:35:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.